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mutation_burden format for stats2json and stats2lims #426

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bryce-turner opened this issue Jul 7, 2021 · 0 comments
Open

mutation_burden format for stats2json and stats2lims #426

bryce-turner opened this issue Jul 7, 2021 · 0 comments
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@bryce-turner
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For mutation burden we can only get sample level mutation burden, but we report it at the library level for consistency with other metrics tools. As a result we currently are using the first library in the list when jetstream parses the datafiles. We should duplicate the mutation burden for each library:

For example:

## METRICS CLASS
MutationsCount  Coverage        MutationBurdenPerMillionBase    SAMPLE  LIBRARY READ_GROUP
68     34046067        1.99729        EXAMPLE_1_BM_T1      K12345
68     34046067        1.99729        EXAMPLE_1_BM_T1      K12346
@bryce-turner bryce-turner self-assigned this Jul 7, 2021
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