NAMESPACE

# Generated by roxygen2: do not edit by hand

export(CentroidCheck)
export(CentroidMSData)
export(ExecutePlan)
export(Export.Annotation)
export(Export.PeakSummary)
export(Export.PeakTable)
export(FormatPeakList)
export(GaussModel)
export(ImportRawMSData)
export(InitDataObjects)
export(InitializaPlan)
export(PerformDataInspect)
export(PerformDataTrimming)
export(PerformParamsOptimization)
export(PerformPeakAlignment)
export(PerformPeakAnnotation)
export(PerformPeakFiling)
export(PerformPeakPicking)
export(PerformPeakProfiling)
export(PerformROIExtraction)
export(PlotSpectraBPIadj)
export(PlotSpectraInsensityStistics)
export(PlotSpectraPCA)
export(PlotSpectraRTadj)
export(PlotXIC)
export(SetAnnotationParam)
export(SetGlobalParallel)
export(SetPeakParam)
export(SetPlotParam)
export(UpdateRawfiles)
export(plotMSfeature)
export(plotSingleTIC)
export(running.plan)
export(updateRawSpectraPath)
import(Biobase)
import(BiocParallel)
import(MSnbase)
import(RColorBrewer)
import(ggplot2)
import(methods)
import(parallel)
import(progress)
import(scales)
import(tools)
import(utils)
importFrom(Cairo,Cairo)
importFrom(Cairo,CairoFonts)
importFrom(Hmisc,rcorr)
importFrom(RBGL,highlyConnSG)
importFrom(cluster,clusGap)
importFrom(data.table,fwrite)
importFrom(entropy,KL.empirical)
importFrom(ggrepel,geom_text_repel)
importFrom(graph,ftM2graphNEL)
importFrom(lattice,cloud)
importFrom(parallel,clusterExport)
importFrom(rsm,ccd)
importFrom(rsm,decode.data)
importFrom(rsm,rsm)
importFrom(stats,density)
importFrom(stats,median)
importFrom(stats,quantile)
importFrom(stats,stepfun)
importFrom(stats,var)
importFrom(tools,file_ext)
importFrom(tools,file_path_as_absolute)
importFrom(utils,head)
importFrom(utils,tail)
useDynLib(OptiLCMS, .registration=TRUE, .fixes = "C_")
importFrom("grDevices", "boxplot.stats", "dev.off", "jpeg")
importFrom("graphics", "abline", "boxplot", "contour", "grid",
           "legend", "par", "points")
importFrom("stats", "approx", "approxfun", "as.formula", "convolve",
           "cor", "cor.test", "cutree", "deriv3", "dist", "dnorm",
           "fft", "fitted", "hclust", "kmeans", "lm", "loess", "lsfit",
           "na.omit", "nextn", "nls", "prcomp", "predict", "sd",
           "smooth.spline", "weighted.mean")