diff --git a/nextflow/main.nf b/nextflow/main.nf index 5ad3563..0ca9067 100644 --- a/nextflow/main.nf +++ b/nextflow/main.nf @@ -20,7 +20,7 @@ params.fastp_json = "${params.outDir}/fastp/*fastp.json" params.fastqc_fastq = "${params.outDir}/fastqc/fastq/*/*" params.fastqc_fastp = "${params.outDir}/fastqc/fastp/*/*" -params.bam = "${params.outDir}/aligned/*.Aligned.sortedByCoord.out.bam" +params.bam = "${params.outDir}/alignment/*.Aligned.sortedByCoord.out.bam" log.info """\ STAR RNA-Seq NextFlow Pipeline (Reference-Based)