diff --git a/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf b/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf
index 83b30b2..f0db03b 100644
--- a/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf
+++ b/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf
@@ -31,7 +31,7 @@ process BAYESTME_SPATIAL_EXPRESSION {
 
     plot_spatial_expression \
         --deconvolution-result ${deconvolution_samples} \
-        --sde-samples ${prefix}/sde_samples.h5 \
+        --sde-result ${prefix}/sde_samples.h5 \
         --output-dir ${prefix}/plots \
         ${args2}
 
diff --git a/nextflow/tests/data/test_spaceranger_data/spatial/tissue_positions_list.csv b/nextflow/tests/data/test_spaceranger_data/spatial/tissue_positions_list.csv
index 9a2d964..52a620f 100644
--- a/nextflow/tests/data/test_spaceranger_data/spatial/tissue_positions_list.csv
+++ b/nextflow/tests/data/test_spaceranger_data/spatial/tissue_positions_list.csv
@@ -1,3 +1,3 @@
 AAACAACGAATAGTTC-1,1,0,0,4650,12203
 AAACAAGTATCTCCCA-1,1,1,1,4887,12338
-AAACAATCTACTAGCA-1,1,0,2,4651,12475
+AAACAATCTACTAGCA-1,0,0,2,4651,12475
diff --git a/nextflow/tests/modules/bayestme/bayestme_bleeding_correction/test.yml b/nextflow/tests/modules/bayestme/bayestme_bleeding_correction/test.yml
index ad67cc0..bc927fb 100644
--- a/nextflow/tests/modules/bayestme/bayestme_bleeding_correction/test.yml
+++ b/nextflow/tests/modules/bayestme/bayestme_bleeding_correction/test.yml
@@ -3,6 +3,6 @@
   tags:
     - bayestme_bleeding_correction
   files:
-    - path: output/bleed_correction_results.h5
-    - path: output/dataset_corrected.h5ad
-    - path: output/plots/basis-functions.pdf
+    - path: output/test/bleed_correction_results.h5
+    - path: output/test/dataset_corrected.h5ad
+    - path: output/test/plots/basis-functions.pdf
diff --git a/nextflow/tests/modules/bayestme/bayestme_deconvolution/main.nf b/nextflow/tests/modules/bayestme/bayestme_deconvolution/main.nf
index 626513e..97eaa18 100644
--- a/nextflow/tests/modules/bayestme/bayestme_deconvolution/main.nf
+++ b/nextflow/tests/modules/bayestme/bayestme_deconvolution/main.nf
@@ -7,7 +7,7 @@ workflow bayestme_deconvolution {
     input = [ [ id:'test', single_end:false ], // meta map
               file(params.test_data['bayestme']['filtered_dataset'], checkIfExists: true),
               5,
-              1.0,
+              100.0,
               []
             ]
     BAYESTME_DECONVOLUTION ( input )
diff --git a/nextflow/tests/modules/bayestme/bayestme_filter_genes/test.yml b/nextflow/tests/modules/bayestme/bayestme_filter_genes/test.yml
index b32cfc5..c7ca701 100644
--- a/nextflow/tests/modules/bayestme/bayestme_filter_genes/test.yml
+++ b/nextflow/tests/modules/bayestme/bayestme_filter_genes/test.yml
@@ -3,4 +3,4 @@
   tags:
     - bayestme_filter_genes
   files:
-    - path: output/dataset_filtered.h5ad
+    - path: output/test/dataset_filtered.h5ad
diff --git a/nextflow/tests/modules/bayestme/bayestme_load_spaceranger/test.yml b/nextflow/tests/modules/bayestme/bayestme_load_spaceranger/test.yml
index 088bbb3..ecb2fd6 100644
--- a/nextflow/tests/modules/bayestme/bayestme_load_spaceranger/test.yml
+++ b/nextflow/tests/modules/bayestme/bayestme_load_spaceranger/test.yml
@@ -3,4 +3,4 @@
   tags:
     - bayestme_load_spaceranger
   files:
-    - path: output/dataset.h5ad
+    - path: output/test/dataset.h5ad
diff --git a/nextflow/tests/modules/bayestme/bayestme_phenotype_selection/test.yml b/nextflow/tests/modules/bayestme/bayestme_phenotype_selection/test.yml
index 92a3454..db49c69 100644
--- a/nextflow/tests/modules/bayestme/bayestme_phenotype_selection/test.yml
+++ b/nextflow/tests/modules/bayestme/bayestme_phenotype_selection/test.yml
@@ -3,4 +3,4 @@
   tags:
     - bayestme_phenotype_selection
   files:
-    - path: output/fold_0.h5ad
+    - path: output/test/fold_0.h5ad