diff --git a/nextflow/modules/bayestme/bayestme_bleeding_correction/main.nf b/nextflow/modules/bayestme/bayestme_bleeding_correction/main.nf index deea810..50b4ace 100644 --- a/nextflow/modules/bayestme/bayestme_bleeding_correction/main.nf +++ b/nextflow/modules/bayestme/bayestme_bleeding_correction/main.nf @@ -3,8 +3,8 @@ process BAYESTME_BLEEDING_CORRECTION { label 'process_high_memory' label 'process_long' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(adata) diff --git a/nextflow/modules/bayestme/bayestme_deconvolution/main.nf b/nextflow/modules/bayestme/bayestme_deconvolution/main.nf index b92b7d8..db69865 100644 --- a/nextflow/modules/bayestme/bayestme_deconvolution/main.nf +++ b/nextflow/modules/bayestme/bayestme_deconvolution/main.nf @@ -3,8 +3,8 @@ process BAYESTME_DECONVOLUTION { label 'process_high_memory' label 'process_long' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(adata), val(n_cell_types), val(spatial_smoothing_parameter), path(expression_truth) diff --git a/nextflow/modules/bayestme/bayestme_filter_genes/main.nf b/nextflow/modules/bayestme/bayestme_filter_genes/main.nf index f434455..05ffef6 100644 --- a/nextflow/modules/bayestme/bayestme_filter_genes/main.nf +++ b/nextflow/modules/bayestme/bayestme_filter_genes/main.nf @@ -2,8 +2,8 @@ process BAYESTME_FILTER_GENES { tag "$meta.id" label 'process_single' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(adata), val(filter_ribosomal_genes), val(n_top_by_standard_deviation), val(spot_threshold), path(expression_truth) diff --git a/nextflow/modules/bayestme/bayestme_load_spaceranger/main.nf b/nextflow/modules/bayestme/bayestme_load_spaceranger/main.nf index b27da41..3a0c799 100644 --- a/nextflow/modules/bayestme/bayestme_load_spaceranger/main.nf +++ b/nextflow/modules/bayestme/bayestme_load_spaceranger/main.nf @@ -2,8 +2,8 @@ process BAYESTME_LOAD_SPACERANGER { tag "$meta.id" label 'process_single' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(spaceranger_dir) diff --git a/nextflow/modules/bayestme/bayestme_phenotype_selection/main.nf b/nextflow/modules/bayestme/bayestme_phenotype_selection/main.nf index 37a5352..efa4689 100644 --- a/nextflow/modules/bayestme/bayestme_phenotype_selection/main.nf +++ b/nextflow/modules/bayestme/bayestme_phenotype_selection/main.nf @@ -20,8 +20,8 @@ process BAYESTME_PHENOTYPE_SELECTION { label 'process_high_memory' label 'process_long' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(adata), val(job_index), val(min_n_cell_types), val(max_n_cell_types), val(min_lambda), val(max_lambda), val(n_folds) diff --git a/nextflow/modules/bayestme/bayestme_read_phenotype_selection_results/main.nf b/nextflow/modules/bayestme/bayestme_read_phenotype_selection_results/main.nf index 52619b0..273e360 100644 --- a/nextflow/modules/bayestme/bayestme_read_phenotype_selection_results/main.nf +++ b/nextflow/modules/bayestme/bayestme_read_phenotype_selection_results/main.nf @@ -2,8 +2,8 @@ process BAYESTME_READ_PHENOTYPE_SELECTION_RESULTS { tag "$meta.id" label "process_single" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), file(fold_results) diff --git a/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf b/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf index e8dbc34..b1b39d9 100644 --- a/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf +++ b/nextflow/modules/bayestme/bayestme_spatial_expression/main.nf @@ -3,8 +3,8 @@ process BAYESTME_SPATIAL_EXPRESSION { label 'process_high_memory' label 'process_long' container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? - 'docker://jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' : - 'docker.io/jeffquinnmsk/bayestme:5e9a3ca9b60378207c76a8e378df164b99abd928' }" + 'docker://jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' : + 'docker.io/jeffquinnmsk/bayestme:172a8bfa3ea29f170313e2622cb6afd595beaf51' }" input: tuple val(meta), path(adata), path(deconvolution_samples)