forked from Helmholtz-UFZ/ufz-galaxy-tools
-
Notifications
You must be signed in to change notification settings - Fork 0
/
tool_list.yaml
3164 lines (3164 loc) · 94.9 KB
/
tool_list.yaml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
install_repository_dependencies: true
install_resolver_dependencies: false
install_tool_dependencies: false
tools:
- name: autodock_vina
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_box
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_ligand
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: autodock_vina_prepare_receptor
owner: bgruening
tool_panel_section_label: Computational chemistry
- name: cutadapt
owner: lparsons
tool_panel_section_label: Fastq Manipulation
- name: multiqc
owner: iuc
tool_panel_section_label: Fastq Manipulation
- name: fastqc
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: trimmomatic
owner: pjbriggs
tool_panel_section_label: Fastq Manipulation
- name: fastq_to_tabular
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: blast_rbh
owner: peterjc
tool_panel_section_label: Sequence Analysis
- name: chromeister
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: mafft
owner: rnateam
tool_panel_section_label: Sequence Analysis
- name: hmmer_jackhmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmsearch
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_phmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmbuild
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_nhmmer
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_nhmmscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: t_coffee
owner: earlhaminst
tool_panel_section_label: Sequence Analysis
- name: gffread
owner: devteam
tool_panel_section_label: Sequence Analysis
- name: cd_hit
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: diamond
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: fastp
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_alimask
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmemit
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmconvert
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmfetch
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: hmmer_hmmalign
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: trim_galore
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: ucsc_blat
owner: yating-l
tool_panel_section_label: Sequence Analysis
- name: clustalw
owner: devteam
tool_panel_section_label: Sequence Analysis
- name: repeat_masker
owner: bgruening
tool_panel_section_label: Sequence Analysis
- name: prokka
owner: crs4
tool_panel_section_label: Sequence Analysis
- name: aligned_to_consensus
owner: ecology
tool_panel_section_label: Sequence Analysis
- name: kofamscan
owner: iuc
tool_panel_section_label: Sequence Analysis
- name: blat
owner: crs4
tool_panel_section_label: Deprecated
- name: locarna_pairwise_p
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_exparnap
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_multiple
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_reliability_profile
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: locarna_pairwise
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: sortmerna
owner: rnateam
tool_panel_section_label: RNA - Utilities for RNA
- name: muscle
owner: crs4
tool_panel_section_label: Sequence Analysis
- name: rdock
owner: earlhaminst
tool_panel_section_label: Computational chemistry
- name: samtools_flagstat
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: picard
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_mpileup
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_slice_bam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_view
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_coverage
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_depth
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_fastx
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_fixmate
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_markdup
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_merge
owner: iuc
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_split
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_stats
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_sort
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_bedcov
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: sam_to_bam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: bam_to_sam
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_calmd
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_idxstats
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: samtools_reheader
owner: devteam
tool_panel_section_label: SAM - Tools for manipulating alignments in the SAM format
- name: abyss
owner: iuc
tool_panel_section_label: Assembly
- name: rnaquast
owner: iuc
tool_panel_section_label: Assembly
- name: velvetoptimiser
owner: simon-gladman
tool_panel_section_label: Assembly
- name: velvet
owner: devteam
tool_panel_section_label: Assembly
- name: quast
owner: iuc
tool_panel_section_label: Assembly
- name: spades
owner: nml
tool_panel_section_label: Assembly
- name: spades_rnaviralspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_plasmidspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_metaviralspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_metaplasmidspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_coronaspades
owner: iuc
tool_panel_section_label: Assembly
- name: spades_biosyntheticspades
owner: iuc
tool_panel_section_label: Assembly
- name: rnaspades
owner: iuc
tool_panel_section_label: Assembly
- name: metaspades
owner: nml
tool_panel_section_label: Assembly
- name: ball
owner: luis
tool_panel_section_label: Computational chemistry - Ball
- name: join
owner: devteam
tool_panel_section_label: Join, Subtract and Group
- name: regex_find_replace
owner: galaxyp
tool_panel_section_label: Text Manipulation
- name: datamash_transpose
owner: iuc
tool_panel_section_label: Text Manipulation
- name: datamash_ops
owner: iuc
tool_panel_section_label: Text Manipulation
- name: datamash_reverse
owner: iuc
tool_panel_section_label: Text Manipulation
- name: column_maker
owner: devteam
tool_panel_section_label: Text Manipulation
- name: singularity_scriptrunner
owner: mbernt
tool_panel_section_label: Text Manipulation
- name: query_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: text_processing
owner: bgruening
tool_panel_section_label: Text Manipulation
- name: get_flanks
owner: devteam
tool_panel_section_label: Genomic Interval Operations
- name: intersect
owner: devteam
tool_panel_section_label: Genomic Interval Operations
- name: xcms_xcmsset
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_group
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_merge
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_plot_chromatogram
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_retcor
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_fillpeaks
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: xcms_summary
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: camera_annotate
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: camera_combinexsannos
owner: workflow4metabolomics
tool_panel_section_label: Metabolomics - W4M
- name: msnbase_readmsdata
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: batchcorrection
owner: melpetera
tool_panel_section_label: Metabolomics - W4M
- name: w4mclassfilter
owner: eschen42
tool_panel_section_label: Metabolomics - W4M
- name: qualitymetrics
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: probmetab
owner: mmonsoor
tool_panel_section_label: Metabolomics - W4M
- name: lcmsmatching
owner: prog
tool_panel_section_label: Metabolomics - W4M
- name: hmdb_ms_search
owner: fgiacomoni
tool_panel_section_label: Metabolomics - W4M
- name: metams_rungc
owner: yguitton
tool_panel_section_label: Metabolomics - W4M
- name: nmr_bucketing
owner: marie-tremblay-metatoul
tool_panel_section_label: Metabolomics - W4M
- name: transformation
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: anova
owner: lecorguille
tool_panel_section_label: Metabolomics - W4M
- name: heatmap
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: multivariate
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: biosigner
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: checkformat
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: combine_metaphlan2_humann2
owner: bebatut
tool_panel_section_label: Metagenomics
- name: taxonomy_krona_chart
owner: crs4
tool_panel_section_label: Metagenomics
- name: humann_regroup_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_barplot
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_reduce_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_rna_dna_norm
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_join_tables
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_rename_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_strain_profiler
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_split_stratified_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_split_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_renorm_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_associate
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann
owner: iuc
tool_panel_section_label: Metagenomics
- name: humann_unpack_pathways
owner: iuc
tool_panel_section_label: Metagenomics
- name: extract_metaphlan_database
owner: iuc
tool_panel_section_label: Metagenomics
- name: customize_metaphlan_database
owner: iuc
tool_panel_section_label: Metagenomics
- name: merge_metaphlan_tables
owner: iuc
tool_panel_section_label: Metagenomics
- name: metaphlan
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_add_metadata
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_from_uc
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_normalize_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_convert
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_summarize_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: biom_subset_table
owner: iuc
tool_panel_section_label: Metagenomics
- name: cat_bins
owner: iuc
tool_panel_section_label: Metagenomics
- name: das_tool
owner: iuc
tool_panel_section_label: Metagenomics
- name: kraken2
owner: iuc
tool_panel_section_label: Metagenomics
- name: megahit
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tree
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_lineage_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tree_qa
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_analyze
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_taxonomy_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_tetra
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_qa
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_taxon_set
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_plot
owner: iuc
tool_panel_section_label: Metagenomics
- name: checkm_lineage_set
owner: iuc
tool_panel_section_label: Metagenomics
- name: gtdbtk_classify_wf
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_extract_kraken_reads
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_beta_diversity
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_combine_kreports
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_alpha_diversity
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_kreport2krona
owner: iuc
tool_panel_section_label: Metagenomics
- name: krakentools_kreport2mpa
owner: iuc
tool_panel_section_label: Metagenomics
- name: metabat2_jgi_summarize_bam_contig_depths
owner: iuc
tool_panel_section_label: Metagenomics
- name: metabat2
owner: iuc
tool_panel_section_label: Metagenomics
- name: krona_text
owner: saskia-hiltemann
tool_panel_section_label: Metagenomics
- name: mothur_bin_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_slayer
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_anosim
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_lefse
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_hcluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_list_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_dists
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sffinfo
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_otu
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_perseus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_count_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_venn
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_align_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_fastq_info
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_rarefaction_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_label
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_deunique_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_list_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pre_cluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_contigs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_phylo_diversity
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pcoa
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_pintail
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pairwise_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_clearcut
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_corr_axes
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_tree
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_design
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_libshuff
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_lefse
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_trim_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_fragments
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_qual
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chop_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_count_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_rabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_otulist
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_classic
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_split_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cooccurrence
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_filter_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_tax
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_nmds
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_biom
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_communitytype
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unifrac_weighted
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_dist_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_shhh_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_sfffiles
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_relabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_oturep
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_heatmap_bin
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_files
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_otu_association
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_otus
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_sharedseqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_collect_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sub_sample
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_mantel
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_sra
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_seq_error
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_amova
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_reverse_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_check
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_uchime
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unique_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_coremicrobiome
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_group
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_rarefaction_single
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_screen_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_trim_flows
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_fastq
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_dist_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_filter_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_phylotype
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_mimarks_attributes
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_degap_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_align_check
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pcr_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_lineage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_parsimony
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sens_spec
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_unifrac_unweighted
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_heatmap_sim
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_pca
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_metastats
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_normalize_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_make_lookup
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_cluster_split
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_consensus_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_ccode
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_dists
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_summary_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_sabund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_shhh_flows
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_mimarkspackage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_rare
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_lineage
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_taxsummary
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_indicator
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_chimera_bellerophon
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_tree_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_sort_seqs
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_classify_rf
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_merge_groups
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_remove_otulabels
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_create_database
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_otu_hierarchy
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_split_abund
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_parse_list
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_primer_design
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_homova
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_get_group
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_deunique_tree
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: mothur_collect_shared
owner: iuc
tool_panel_section_label: Metagenomics - mothur
- name: fasta_stats
owner: simon-gladman
tool_panel_section_label: Fasta Manipulation
- name: make_nr
owner: peterjc
tool_panel_section_label: Fasta Manipulation
- name: ucsc_fasplit
owner: iuc
tool_panel_section_label: Fasta Manipulation
- name: length_and_gc_content
owner: iuc
tool_panel_section_label: Fasta Manipulation
- name: fastx_artifacts_filter
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_barcode_splitter
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_clipper
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_collapser
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_nucleotides_distribution
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_quality_statistics
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_renamer
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_reverse_complement
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastx_trimmer
owner: devteam
tool_panel_section_label: Fasta Manipulation
- name: fastq_paired_end_deinterlacer
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: fastq_paired_end_interlacer
owner: devteam
tool_panel_section_label: Fastq Manipulation
- name: filter_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: sqlite_to_tabular
owner: iuc
tool_panel_section_label: Text Manipulation
- name: univariate
owner: ethevenot
tool_panel_section_label: Metabolomics - W4M
- name: unipept
owner: galaxyp
tool_panel_section_label: Proteomics
- name: thermo_raw_file_converter
owner: galaxyp
tool_panel_section_label: Proteomics
- name: meta_proteome_analyzer
owner: galaxyp
tool_panel_section_label: Proteomics
- name: uniprot_rest_interface
owner: bgruening
tool_panel_section_label: Proteomics
- name: peptideshaker
owner: galaxyp
tool_panel_section_label: Proteomics
- name: uniprotxml_downloader
owner: galaxyp
tool_panel_section_label: Proteomics
- name: eggnog_mapper
owner: galaxyp
tool_panel_section_label: Proteomics
- name: metanovo
owner: galaxyp
tool_panel_section_label: Proteomics
- name: maxquant
owner: galaxyp
tool_panel_section_label: Proteomics
- name: dbbuilder
owner: galaxyp
tool_panel_section_label: Proteomics
- name: alphafold2
owner: galaxy-australia
tool_panel_section_label: Proteomics
- name: calisp
owner: galaxyp
tool_panel_section_label: Proteomics
- name: bedtools
owner: iuc
tool_panel_section_label: BED tools
- name: deseq2
owner: iuc
tool_panel_section_label: Transcriptomics
- name: trinity_align_and_estimate_abundance
owner: iuc
tool_panel_section_label: Transcriptomics
- name: trinity
owner: iuc
tool_panel_section_label: Transcriptomics
- name: egsea
owner: iuc
tool_panel_section_label: Transcriptomics
- name: featurecounts
owner: iuc
tool_panel_section_label: Transcriptomics
- name: goseq
owner: iuc
tool_panel_section_label: Transcriptomics
- name: limma_voom
owner: iuc
tool_panel_section_label: Transcriptomics
- name: stringtie
owner: iuc
tool_panel_section_label: Transcriptomics
- name: gffcompare
owner: iuc
tool_panel_section_label: Transcriptomics
- name: multigsea
owner: iuc
tool_panel_section_label: Transcriptomics
- name: emboss_5
owner: devteam
tool_panel_section_label: Sequence Analysis (EMBOSS)