diff --git a/utils.qmd b/utils.qmd index 4e76556..49af812 100644 --- a/utils.qmd +++ b/utils.qmd @@ -77,6 +77,16 @@ Molecular spectrum networking is a tool for creating networks that visualize the To follow this video, please download the dataset and check the description in [https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest](https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest). +## 7. Console app + +1. Download console app from [MS-DIAL releases](https://github.com/systemsomicslab/MsdialWorkbench/releases). +2. Open your terminal or PowerShell. +3. You can get help by typing "YourPathOfMSDIALCUI\MSDIALCUI.exe". +![fig1-1](images/MSDIALCUI/Console_help.png) +4. Type "YourPath\MSDIALCUI.exe YourAnalysisType -i YourInputFolder\ -o YourOutputFolder\ -m YourLibraryFolder\YourLibraryFile -p". For example, "YourPath\MSDIALCUI.exe lcms -i .\rawdata\ -o .\rawdata\ -m YourLibraryFolder\msdial_console_param4lipidomics.txt -p" +5. It will take around a minute to start processing your data. +![fig1-2](images/MSDIALCUI/Console_example.png) + ### The Workflow 1. Download the dataset of "Molecular spectrum networking tutorial dataset" in [https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest](https://zenodo.org/communities/msdial?q=&l=list&p=1&s=10&sort=newest) 2. Open *.mdproject in MS-DIAL5