citations.bib

@article{tsugawa_lipidome_2020,
	title = {A lipidome atlas in {MS}-{DIAL} 4},
	volume = {38},
	issn = {1087-0156, 1546-1696},
	url = {https://www.nature.com/articles/s41587-020-0531-2},
	doi = {10.1038/s41587-020-0531-2},
	language = {en},
	number = {10},
	urldate = {2024-01-12},
	journal = {Nature Biotechnology},
	author = {Tsugawa, Hiroshi and Ikeda, Kazutaka and Takahashi, Mikiko and Satoh, Aya and Mori, Yoshifumi and Uchino, Haruki and Okahashi, Nobuyuki and Yamada, Yutaka and Tada, Ipputa and Bonini, Paolo and Higashi, Yasuhiro and Okazaki, Yozo and Zhou, Zhiwei and Zhu, Zheng-Jiang and Koelmel, Jeremy and Cajka, Tomas and Fiehn, Oliver and Saito, Kazuki and Arita, Masanori and Arita, Makoto},
	month = oct,
	year = {2020},
	pages = {1159--1163},
}

@article{tsugawa_cheminformatics_2019,
	title = {A cheminformatics approach to characterize metabolomes in stable-isotope-labeled organisms},
	volume = {16},
	copyright = {2019 The Author(s), under exclusive licence to Springer Nature America, Inc.},
	issn = {1548-7105},
	url = {https://www.nature.com/articles/s41592-019-0358-2},
	doi = {10.1038/s41592-019-0358-2},
	abstract = {We report a computational approach (implemented in MS-DIAL 3.0; http://prime.psc.riken.jp/) for metabolite structure characterization using fully 13C-labeled and non-labeled plants and LC–MS/MS. Our approach facilitates carbon number determination and metabolite classification for unknown molecules. Applying our method to 31 tissues from 12 plant species, we assigned 1,092 structures and 344 formulae to 3,604 carbon-determined metabolite ions, 69 of which were found to represent structures currently not listed in metabolome databases.},
	language = {en},
	number = {4},
	urldate = {2024-01-12},
	journal = {Nature Methods},
	author = {Tsugawa, Hiroshi and Nakabayashi, Ryo and Mori, Tetsuya and Yamada, Yutaka and Takahashi, Mikiko and Rai, Amit and Sugiyama, Ryosuke and Yamamoto, Hiroyuki and Nakaya, Taiki and Yamazaki, Mami and Kooke, Rik and Bac-Molenaar, Johanna A. and Oztolan-Erol, Nihal and Keurentjes, Joost J. B. and Arita, Masanori and Saito, Kazuki},
	month = apr,
	year = {2019},
	keywords = {Cheminformatics, Data mining, Mass spectrometry, Metabolomics, Software},
	pages = {295--298},
}

@article{lai_identifying_2018,
	title = {Identifying metabolites by integrating metabolome databases with mass spectrometry cheminformatics},
	volume = {15},
	issn = {1548-7091, 1548-7105},
	url = {https://www.nature.com/articles/nmeth.4512},
	doi = {10.1038/nmeth.4512},
	language = {en},
	number = {1},
	urldate = {2024-01-12},
	journal = {Nature Methods},
	author = {Lai, Zijuan and Tsugawa, Hiroshi and Wohlgemuth, Gert and Mehta, Sajjan and Mueller, Matthew and Zheng, Yuxuan and Ogiwara, Atsushi and Meissen, John and Showalter, Megan and Takeuchi, Kohei and Kind, Tobias and Beal, Peter and Arita, Masanori and Fiehn, Oliver},
	month = jan,
	year = {2018},
	pages = {53--56},
}

@article{tsugawa_ms-dial:_2015,
	title = {{MS}-{DIAL}: data-independent {MS}/{MS} deconvolution for comprehensive metabolome analysis},
	volume = {12},
	issn = {1548-7091, 1548-7105},
	shorttitle = {{MS}-{DIAL}},
	url = {https://www.nature.com/articles/nmeth.3393},
	doi = {10.1038/nmeth.3393},
	language = {en},
	number = {6},
	urldate = {2024-01-12},
	journal = {Nature Methods},
	author = {Tsugawa, Hiroshi and Cajka, Tomas and Kind, Tobias and Ma, Yan and Higgins, Brendan and Ikeda, Kazutaka and Kanazawa, Mitsuhiro and VanderGheynst, Jean and Fiehn, Oliver and Arita, Masanori},
	month = jun,
	year = {2015},
	pages = {523--526},
}