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Protein names ending with numbers produces error in load_confidence_data in colabfold_process_output.py #13

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nt314p opened this issue Oct 15, 2024 · 0 comments

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@nt314p
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nt314p commented Oct 15, 2024

Hi,

Because the load_confidence_data function uses regex to parse parameters from pdb file names, the regex has the possibility to match with the protein name derived from the fasta file. If this matching occurs, the parse is incorrect or fails.

Would it be possible to pass data associated with the pdb files in a file instead of the name? A csv file could be used.

Thanks!

@nt314p nt314p changed the title Protein names containing _ or - produces error in load_confidence_data in colabfold_process_output.py Protein names ending with numbers produces error in load_confidence_data in colabfold_process_output.py Oct 16, 2024
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