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AddMotifs ERROR: Error in h(simpleError(msg, call)) : error in evaluating the argument 'x' in selecting a method for function 'xvcopy': some ranges are out of bounds #1815

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elegantmedstu opened this issue Nov 13, 2024 · 0 comments
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@elegantmedstu
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HI!, I used a forged Axolotl BSgenome to perform AddMotifs operation, but the error displayed is as shown above. Additionally, I attempted to construct the BSgenome package by retaining only chromosome level data, but the error still persists. I don't know where the problem lies, I hope to get your help. Thank you very much!
This is my code:
pfm = getMatrixSet(JASPAR2022, opts = list(tax_group = "vertebrates", all_versions = F))
integ_animal <- qread("/home/QYH/_lyxfile/00project/01regeneration/02signac测试/01qs/05integ_animal_clusters.qs")
integ_macs_animal <- qread("/home/QYH/_lyxfile/00project/01regeneration/02signac测试/01qs/06integ_macs_animal_clusters.qs")
DefaultAssay(integ_animal) = "ATAC"
integ_animal

add motif information

integ_animal = AddMotifs(object = integ_animal, pfm = pfm, assay = "ATAC", all_versions = T,
genome = BSgenome.Amexicanum.NCBI.allchr.ambMex60DD)
image

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@elegantmedstu elegantmedstu added the bug Something isn't working label Nov 13, 2024
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