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Metagene plots #1787

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diego-rt opened this issue Sep 25, 2024 · 0 comments
Open

Metagene plots #1787

diego-rt opened this issue Sep 25, 2024 · 0 comments
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enhancement New feature or request

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@diego-rt
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Hello,

I was wondering whether there is a way to generate ATAC-seq metagene plots in Signac. I'm thinking of something akin to plotProfile or plotHeatmap in deepTools to plot the aggregate of the signal summed across i.e. hundreds of genomic ranges such as peaks or other regions of interest.

You have something quite similar in place in the Footprint function, but since it requires same-sized regions then you can't use it with peak sets which would be variable width.

Many thanks in advance!

@diego-rt diego-rt added the enhancement New feature or request label Sep 25, 2024
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