From 8b98f63f89fb988fcfd5e1be6af6de316353008c Mon Sep 17 00:00:00 2001 From: timoast <4591688+timoast@users.noreply.github.com> Date: Thu, 4 Apr 2024 09:35:37 +0800 Subject: [PATCH] Updates --- vignettes/integrate_atac.Rmd | 1 + vignettes/motif_vignette.Rmd | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/vignettes/integrate_atac.Rmd b/vignettes/integrate_atac.Rmd index 99ea0fc..dfcd2da 100644 --- a/vignettes/integrate_atac.Rmd +++ b/vignettes/integrate_atac.Rmd @@ -32,6 +32,7 @@ wget https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_1 wget https://cf.10xgenomics.com/samples/cell-arc/1.0.0/pbmc_granulocyte_sorted_10k/pbmc_granulocyte_sorted_10k_atac_fragments.tsv.gz.tbi # scATAC +# https://www.10xgenomics.com/datasets/10-k-peripheral-blood-mononuclear-cells-pbm-cs-from-a-healthy-donor-next-gem-v-1-1-1-1-standard-2-0-0 wget https://cf.10xgenomics.com/samples/cell-atac/2.0.0/atac_pbmc_10k_nextgem/atac_pbmc_10k_nextgem_fragments.tsv.gz wget https://cf.10xgenomics.com/samples/cell-atac/2.0.0/atac_pbmc_10k_nextgem/atac_pbmc_10k_nextgem_fragments.tsv.gz.tbi ``` diff --git a/vignettes/motif_vignette.Rmd b/vignettes/motif_vignette.Rmd index bd3280b..e843e34 100644 --- a/vignettes/motif_vignette.Rmd +++ b/vignettes/motif_vignette.Rmd @@ -158,7 +158,7 @@ knitr::kable(head(enriched.motifs)) We can also plot the position weight matrices for the motifs, so we can visualize the different motif sequences. -```{r} +```{r warning=FALSE} MotifPlot( object = mouse_brain, motifs = head(rownames(enriched.motifs))