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EPACTS - Efficient and Parallelizable Association Container Toolbox

What is EPACTS?

EPACTS is a versatile software pipeline to perform various statistical tests for identifying genome-wide association from sequence data through a user-friendly interface, both to scientific analysts and to method developer.s

Downloading and Installing EPACTS

Prerequisite Packages

  • zlib
  • ghostscript
  • R-studio
  • groff
  • gnuplot
  • automake

Installing these packages on Centos:

$ sudo yum install epel-release
$ sudo yum update
$ sudo yum install zlib ghoshcript R groff gnuplot automake -y

Initialize the autoreconf program:

$ autoreconf -f -i

You can clone the current snapshot of this repository to install as well

$ git clone https://github.com/statgen/EPACTS.git
$ cd EPACTS
$ ./configure --prefix [/path/to/install]
$ make
$ make install

EPACTS Documentation

The latest version of documentation of EPACTS can be found at http://genome.sph.umich.edu/wiki/EPACTS

Feedbacks

Feel free to contact Hyun Min Kang ([email protected]) or joint EPACTS Google group (http://groups.google.com/group/epacts) to ask questions about EPACTS