From 7c2b6660be5ae2de7535d5234a8d1b37568f5103 Mon Sep 17 00:00:00 2001
From: Zach Burnett <zburnett@stsci.edu>
Date: Thu, 29 Aug 2024 09:44:59 -0400
Subject: [PATCH] override environment after installing extra (#167)

---
 .github/workflows/test.yaml | 68 ++++++++++---------------------------
 1 file changed, 17 insertions(+), 51 deletions(-)

diff --git a/.github/workflows/test.yaml b/.github/workflows/test.yaml
index af2228a..c6b8779 100644
--- a/.github/workflows/test.yaml
+++ b/.github/workflows/test.yaml
@@ -35,59 +35,27 @@ jobs:
         python-version: [ '3.10', '3.11', '3.12' ]
         include:
           - package: acstools
-            test-dependencies: >-
-              matplotlib
-              scipy
-              scikit-image
-              stsci.tools
-              stsci.imagestats
-              photutils
-              dask
-              pytest
-              pytest-astropy-header
-              pytest-remotedata
-              ci-watson 
+            test-extras: test
             pytest-args: --remote-data -v
           - package: asdf
-            test-dependencies: >-
-              "lz4>=0.10"
-              "fsspec[http]>=2022.8.2"
-              "lz4>=0.10"
-              psutil
-              "pytest>=8"
-              pytest-remotedata
+            test-extras: tests
             pytest-args: --remote-data --durations=10
           - package: ccdproc
-            test-dependencies: >-
-              pytest-astropy>=0.10.0
-              memory_profiler
+            test-extras: test
             pytest-args: -W ignore
           - package: costools
-            test-dependencies: >-
-              pytest
-              pytest-cov
+            test-extras: test
           - package: jwst
-            test-dependencies: >-
-              "ci-watson>=0.5.0"
-              "colorama>=0.4.1"
-              "readchar>=3.0"
-              ruff
-              "pytest>=6.0.0"
-              "pytest-cov>=2.9.0"
-              "pytest-doctestplus>=0.10.0"
-              "requests_mock>=1.0"
+            test-extras: test
             crds-observatory: jwst
           # - package: pysynphot
           #   test-dependencies: >-
           #     pytest
           #     pytest-remotedata
           - package: reftools
-            test-dependencies: >-
-              pytest-remotedata
-              pytest-astropy-header
+            test-dependencies: test
           - package: synphot
-            test-dependencies: >-
-              pytest-astropy
+            test-dependencies: test
           - package: wfpc2tools
         exclude:
           - runs-on: macos-13
@@ -126,6 +94,9 @@ jobs:
           init-shell: none
           generate-run-shell: true
       - run: pip install pytest pytest-xdist ${{ matrix.test-dependencies }}
+      - if: matrix.test-extras != ''
+        run: pip install ${{ matrix.package }}[${{ matrix.test-extras }}]
+      - run: micromamba update -f environment.yaml
       - run: pip list
       - run: pytest --pyargs ${{ matrix.package }} ${{ matrix.pytest-args }} -n auto --dist=loadscope 
   test_from_source:
@@ -139,18 +110,11 @@ jobs:
         include:
           - package: calcos
             repository: spacetelescope/calcos
-            test-dependencies: >-
-              ci-watson
-              pytest
-              pytest-cov
+            test-extras: test
             pytest-args: --slow
           - package: drizzlepac
             repository: spacetelescope/drizzlepac
-            test-dependencies: >-
-                ci_watson
-                crds
-                pytest
-                pytest-remotedata
+            test-extras: test
           - package: hstcal
             repository: spacetelescope/hstcal
             test-dependencies: >-
@@ -163,9 +127,7 @@ jobs:
             repository: spacetelescope/stistools
           - package: stsynphot
             repository: spacetelescope/stsynphot_refactor
-            test-dependencies: >-
-              pytest-astropy
-              ci-watson
+            test-extras: test
         exclude:
           - runs-on: macos-13
             python-version: '3.10'
@@ -215,9 +177,13 @@ jobs:
           ref: ${{ steps.package_version.outputs.version }}
           fetch-depth: 0
       - run: pip install pytest pytest-xdist ${{ matrix.test-dependencies }}
+      - if: matrix.test-extras != ''
+        run: pip install .[${{ matrix.test-extras }}]
+        working-directory: ${{ matrix.package }}
       - if: matrix.package != 'hstcal'
         run: pip install -e .
         working-directory: ${{ matrix.package }}
+      - run: micromamba update -f stenv/environment.yaml
       - run: pip list
       - if: matrix.pre_command != ''
         run: ${{ matrix.pre_command }}