Repository for organising and distributing code, data and results related to the inhomogeneous l-TASEP and its application to mRNA translation as detailed in:
Erdmann-Pham, D.D., Dao Duc, K., and Song, Y.S. The key parameters that govern translation efficiency. Cell Systems, in press.
This is a Mathematica notebook to reproduce results and figures used in our main manuscript. It contains functions for
- computing key parameters of the hydrodynamic limit from ribosome profiling data
- simulating and predicting ribosome densities for fixed system parameters
- plotting a set of genes (with inferred hydrodynamic parameters) in a combined phase diagram.