Fix query_generator for new compilation stage after optimization applied

[sfc-gh-yzou]

1. Which Jira issue is this PR addressing? Make sure that there is an accompanying issue to your PR.
   SNOW-1641324

2. Fill out the following pre-review checklist:

   • I am adding a new automated test(s) to verify correctness of my new code
     • If this test skips Local Testing mode, I'm requesting review from @snowflakedb/local-testing
   • I am adding new logging messages
   • I am adding a new telemetry message
   • I am adding new credentials
   • I am adding a new dependency
   • If this is a new feature/behavior, I'm adding the Local Testing parity changes.

3. Please describe how your code solves the related issue.
   The test Enable CTE Optimization merge gate is currently failing because

1. the _projection_in_str for select statement is reset properly after updating, which causes the expr_alias is updated properly during query generation
2. query parameter is not propogated properly during query generation which causes variable binding query fail

[sfc-gh-yzou]

daily job started here https://github.com/snowflakedb/snowpark-python/actions/runs/10583546111