From b1922c5dcdcaa2960fe1cdd47ed1351ea89d052e Mon Sep 17 00:00:00 2001 From: jorainer Date: Tue, 2 Apr 2024 09:21:49 +0200 Subject: [PATCH] ci: force installation of MsCoreUtils from github --- .github/workflows/check-bioc.yml | 5 +++-- DESCRIPTION | 4 ++-- 2 files changed, 5 insertions(+), 4 deletions(-) diff --git a/.github/workflows/check-bioc.yml b/.github/workflows/check-bioc.yml index a9d90f242..75482f579 100644 --- a/.github/workflows/check-bioc.yml +++ b/.github/workflows/check-bioc.yml @@ -54,8 +54,8 @@ jobs: matrix: config: - { os: ubuntu-latest, r: 'devel', bioc: 'devel', cont: "bioconductor/bioconductor_docker:devel", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" } - - { os: macOS-latest, r: 'devel', bioc: '3.19'} - - { os: windows-latest, r: 'devel', bioc: '3.19'} + - { os: macOS-latest, r: 'next', bioc: '3.19'} + - { os: windows-latest, r: 'next', bioc: '3.19'} env: R_REMOTES_NO_ERRORS_FROM_WARNINGS: true RSPM: ${{ matrix.config.rspm }} @@ -178,6 +178,7 @@ jobs: ## Ideally, all dependencies should get installed in the first pass. ## Pass #1 at installing dependencies + BiocManager::install("RforMassSpectrometry/MsCoreUtils") BiocManager::install(c("ncdf4", "mzR")) message(paste('****', Sys.time(), 'pass number 1 at installing dependencies: local dependencies ****')) remotes::install_local(dependencies = TRUE, repos = diff --git a/DESCRIPTION b/DESCRIPTION index d5e084bc5..d63fae793 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -41,8 +41,8 @@ Authors@R: c( role = "ctb", comment = c(ORCID = "0000-0002-5492-6904")), person(given = "Carl", family = "Brunius", - email = "carl.brunius@chalmers.se", - role = "ctb", + email = "carl.brunius@chalmers.se", + role = "ctb", comment = c(ORCID = "0000-0003-3957-870X")) ) Depends: