From ec9594abb3d0c1068354156edf2b78a12e87ada9 Mon Sep 17 00:00:00 2001 From: Steven Meisler Date: Tue, 24 Oct 2023 14:22:20 -0400 Subject: [PATCH] Change default search distance to 2mm Following guidance in Yeh et al., 2019 (NeuroImage) --- fsub_extractor/cli_starters/extractor_start.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/fsub_extractor/cli_starters/extractor_start.py b/fsub_extractor/cli_starters/extractor_start.py index 39f0293..12c5854 100644 --- a/fsub_extractor/cli_starters/extractor_start.py +++ b/fsub_extractor/cli_starters/extractor_start.py @@ -198,9 +198,9 @@ def get_parser(): ext_args.add_argument( "--search-dist", "--search_dist", - help="Distance in mm to search from streamlines for ROIs (float). Default is 3.0 mm. Ignored if --search-type is 'end' or 'all'.", + help="Distance in mm to search from streamlines for ROIs (float). Default is 2.0 mm. Ignored if --search-type is 'end' or 'all'.", type=check_positive_float, - default=3.0, + default=2.0, metavar=("DISTANCE"), ) ext_args.add_argument(