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env.yaml
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env.yaml
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name: Bepitope
channels:
- pytorch
- huggingface
- pyg
- conda-forge
- anaconda
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- blas=1.0=mkl
- bleach=4.1.0=pyhd3eb1b0_0
- bokeh=2.4.3=py38h06a4308_0
- bottleneck=1.3.5=py38h7deecbd_0
- brotli=1.0.9=he6710b0_2
- brotli-python=1.0.9=py38h6a678d5_7
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.05.30=h06a4308_0
- certifi=2023.7.22=py38h06a4308_0
- cffi=1.15.0=py38hd667e15_1
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- cryptography=37.0.1=py38h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- curl=7.84.0=h5eee18b_0
- cycler=0.11.0=pyhd3eb1b0_0
- dataclasses=0.8=pyh6d0b6a4_7
- dbus=1.13.18=hb2f20db_0
- et_xmlfile=1.1.0=py38h06a4308_0
- expat=2.4.4=h295c915_0
- ffmpeg=4.2.2=h20bf706_0
- filelock=3.9.0=py38h06a4308_0
- fontconfig=2.13.1=h6c09931_0
- fonttools=4.25.0=pyhd3eb1b0_0
- freetype=2.11.0=h70c0345_0
- giflib=5.2.1=h7b6447c_0
- glew=2.1.0=h9c3ff4c_2
- glib=2.69.1=h4ff587b_1
- glm=0.9.9.4=hc9558a2_0
- gmp=6.2.1=h2531618_2
- gnutls=3.6.15=he1e5248_0
- gst-plugins-base=1.14.0=h8213a91_2
- gstreamer=1.14.0=h28cd5cc_2
- hdf4=4.2.15=h10796ff_3
- hdf5=1.10.6=nompi_h7c3c948_1111
- huggingface_hub=0.2.1=pyhd3eb1b0_0
- icu=58.2=he6710b0_3
- idna=3.3=pyhd3eb1b0_0
- importlib-metadata=4.11.3=py38h06a4308_0
- importlib_metadata=4.11.3=hd3eb1b0_0
- intel-openmp=2021.4.0=h06a4308_3561
- jdcal=1.4.1=pyhd3eb1b0_0
- jinja2=3.0.3=pyhd3eb1b0_0
- joblib=1.1.0=pyhd3eb1b0_0
- jpeg=9e=h7f8727e_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.3.2=py38h295c915_0
- krb5=1.19.3=h3790be6_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.38=h1181459_0
- libcurl=7.84.0=h91b91d3_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=he6710b0_2
- libgcc-ng=11.2.0=h1234567_0
- libgfortran-ng=7.5.0=ha8ba4b0_17
- libgfortran4=7.5.0=ha8ba4b0_17
- libglu=9.0.0=he1b5a44_1001
- libgomp=11.2.0=h1234567_0
- libidn2=2.3.2=h7f8727e_0
- libnetcdf=4.7.4=nompi_h56d31a8_107
- libnghttp2=1.46.0=hce63b2e_0
- libopus=1.3.1=h7b6447c_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.20.1=h4ff587b_0
- libssh2=1.10.0=ha56f1ee_2
- libstdcxx-ng=11.2.0=h1234567_0
- libtasn1=4.16.0=h27cfd23_0
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libuuid=1.0.3=h7f8727e_2
- libuv=1.40.0=h7b6447c_0
- libvpx=1.7.0=h439df22_0
- libwebp=1.2.2=h55f646e_0
- libwebp-base=1.2.2=h7f8727e_0
- libxcb=1.15=h7f8727e_0
- libxml2=2.9.12=h74e7548_2
- lz4-c=1.9.3=h295c915_1
- markdown=3.4.1=py38h06a4308_0
- markupsafe=2.0.1=py38h27cfd23_0
- matplotlib=3.5.0=py38h06a4308_0
- matplotlib-base=3.5.0=py38h3ed280b_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- munkres=1.1.4=py_0
- ncurses=6.3=h7f8727e_2
- nettle=3.7.3=hbbd107a_1
- networkx=2.7.1=pyhd3eb1b0_0
- numexpr=2.8.1=py38h6abb31d_0
- openh264=2.1.1=h4ff587b_0
- openpyxl=3.0.5=py_0
- openssl=1.1.1u=h7f8727e_0
- packaging=21.3=pyhd3eb1b0_0
- pandas=1.3.4=py38h8c16a72_0
- panel=0.14.3=py38h06a4308_0
- param=1.12.3=py38h06a4308_0
- pcre=8.45=h295c915_0
- pillow=9.2.0=py38hace64e9_1
- pmw=2.0.1=py38h578d9bd_1004
- protobuf=3.20.1=py38h295c915_0
- pycparser=2.21=pyhd3eb1b0_0
- pyct=0.5.0=py38h06a4308_0
- pyg=2.0.4=py38_torch_1.10.0_cu113
- pymol-open-source=2.5.0=py38h8341299_4
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.4=pyhd3eb1b0_0
- pyqt=5.9.2=py38h05f1152_4
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.12=h12debd9_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python-louvain=0.15=pyhd3eb1b0_0
- python_abi=3.8=1_cp38
- pytorch=1.10.1=py3.8_cuda11.3_cudnn8.2.0_0
- pytorch-cluster=1.6.0=py38_torch_1.10.0_cu113
- pytorch-mutex=1.0=cuda
- pytorch-scatter=2.0.9=py38_torch_1.10.0_cu113
- pytorch-sparse=0.6.13=py38_torch_1.10.0_cu113
- pytorch-spline-conv=1.2.1=py38_torch_1.10.0_cu113
- pytz=2021.3=pyhd3eb1b0_0
- pyviz_comms=2.0.2=pyhd3eb1b0_0
- pyyaml=6.0.1=py38h5eee18b_0
- qt=5.9.7=h5867ecd_1
- readline=8.1.2=h7f8727e_1
- requests=2.27.1=pyhd3eb1b0_0
- scikit-learn=1.0.1=py38h51133e4_0
- scikit-plot=0.3.7=py_1
- sip=4.19.13=py38h295c915_0
- six=1.16.0=pyhd3eb1b0_1
- sqlite=3.38.3=hc218d9a_0
- threadpoolctl=2.2.0=pyh0d69192_0
- tk=8.6.11=h1ccaba5_1
- torchaudio=0.10.1=py38_cu113
- torchvision=0.11.2=py38_cu113
- tqdm=4.64.0=py38h06a4308_0
- urllib3=1.26.18=py38h06a4308_0
- webencodings=0.5.1=py38_1
- x264=1!157.20191217=h7b6447c_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h7f8727e_1
- yacs=0.1.6=pyhd3eb1b0_1
- yaml=0.2.5=h7b6447c_0
- zipp=3.11.0=py38h06a4308_0
- zlib=1.2.12=h7f8727e_2
- zstd=1.4.9=haebb681_0
- pip:
- appdirs==1.4.4
- asttokens==2.4.1
- attrs==23.2.0
- backcall==0.2.0
- beautifulsoup4==4.12.3
- biopandas==0.5.1.dev0
- biopython==1.83
- bioservices==1.11.2
- biotite==0.40.0
- cattrs==23.2.3
- click==8.1.7
- colorama==0.4.6
- colorlog==6.8.2
- comm==0.2.2
- debugpy==1.8.1
- decorator==5.1.1
- deepdiff==7.0.1
- easydev==0.13.2
- exceptiongroup==1.2.1
- executing==2.0.1
- fair-esm==2.0.0
- gevent==24.2.1
- graphein==1.7.6
- greenlet==3.0.3
- grequests==0.7.0
- ipykernel==6.29.4
- ipython==8.12.3
- jaxtyping==0.2.19
- jedi==0.19.1
- jupyter-client==8.6.2
- jupyter-core==5.7.2
- line-profiler==4.1.3
- loguru==0.7.2
- looseversion==1.1.2
- lxml==5.2.2
- markdown-it-py==3.0.0
- matplotlib-inline==0.1.7
- mdurl==0.1.2
- mmtf-python==1.1.3
- msgpack==1.0.8
- multipledispatch==1.0.0
- nest-asyncio==1.6.0
- numpy==1.23.5
- opencv-python==4.10.0.84
- ordered-set==4.1.0
- parso==0.8.4
- pexpect==4.9.0
- pickleshare==0.7.5
- pip==24.0
- platformdirs==4.2.2
- plotly==5.22.0
- prompt-toolkit==3.0.47
- psutil==6.0.0
- ptyprocess==0.7.0
- pure-eval==0.2.2
- pydantic==1.10.16
- pygments==2.18.0
- pyzmq==26.0.3
- requests-cache==1.2.1
- rich==13.7.1
- rich-click==1.8.3
- scipy==1.10.1
- seaborn==0.13.2
- setuptools==59.8.0
- soupsieve==2.5
- stack-data==0.6.3
- suds-community==1.1.2
- tenacity==8.4.1
- tornado==6.4.1
- traitlets==5.14.3
- typeguard==4.0.0
- typing-extensions==4.5.0
- url-normalize==1.4.3
- wcwidth==0.2.13
- wget==3.2
- wheel==0.43.0
- wrapt==1.16.0
- xarray==2023.1.0
- xmltodict==0.13.0
- zope-event==5.0
- zope-interface==6.4.post2
prefix: /home/sjchoi/anaconda3/envs/Bepitope