From e07c3d636a67ff446cb9112d545791e3b9496f59 Mon Sep 17 00:00:00 2001 From: pdiakumis Date: Sat, 15 Jun 2024 11:31:08 +1000 Subject: [PATCH] =?UTF-8?q?Bump=20version:=201.0.1.9015=20=E2=86=92=201.4.?= =?UTF-8?q?1.9014?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .bumpversion.cfg | 2 +- .github/workflows/build_conda_recipes.yaml | 2 +- conda/env/yml/pcgr.yml | 2 +- conda/env/yml/pcgrr.yml | 2 +- conda/env/yml/pkgdown.yml | 2 +- conda/recipe/pcgr/meta.yaml | 2 +- conda/recipe/pcgrr/meta.yaml | 2 +- pcgr/_version.py | 2 +- pcgrr/DESCRIPTION | 2 +- pcgrr/vignettes/installation.Rmd | 6 +++--- pyproject.toml | 2 +- 11 files changed, 13 insertions(+), 13 deletions(-) diff --git a/.bumpversion.cfg b/.bumpversion.cfg index c48a9b02..a27715b8 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 1.0.1.9015 +current_version = 1.4.1.9014 commit = True tag = False parse = (?P\d+)\.(?P\d+)\.(?P\d+)(\.(?P\d+))? diff --git a/.github/workflows/build_conda_recipes.yaml b/.github/workflows/build_conda_recipes.yaml index 56eb528b..e626c1c1 100644 --- a/.github/workflows/build_conda_recipes.yaml +++ b/.github/workflows/build_conda_recipes.yaml @@ -10,7 +10,7 @@ env: recipe_path: conda/recipe env_yml_path: conda/env/yml env_lock_path: conda/env/lock - VERSION: '1.0.1.9015' # versioned by bump2version + VERSION: '1.4.1.9014' # versioned by bump2version jobs: build_pcgrr_conda_pkg: # When merging to one of the branches above and the commit message matches diff --git a/conda/env/yml/pcgr.yml b/conda/env/yml/pcgr.yml index b7c9f494..fa2c0fba 100644 --- a/conda/env/yml/pcgr.yml +++ b/conda/env/yml/pcgr.yml @@ -6,7 +6,7 @@ channels: - conda-forge dependencies: - - pcgr::pcgr ==1.0.1.9015 # versioned by bump2version + - pcgr::pcgr ==1.4.1.9014 # versioned by bump2version - bedtools - bcftools - cyvcf2 diff --git a/conda/env/yml/pcgrr.yml b/conda/env/yml/pcgrr.yml index 44b65f0c..6d4b3aae 100644 --- a/conda/env/yml/pcgrr.yml +++ b/conda/env/yml/pcgrr.yml @@ -7,7 +7,7 @@ channels: dependencies: - python - - pcgr::r-pcgrr ==1.0.1.9015 # versioned by bump2version + - pcgr::r-pcgrr ==1.4.1.9014 # versioned by bump2version - pcgr::r-cpsr - r-argparse - bioconductor-bsgenome.hsapiens.ucsc.hg38 diff --git a/conda/env/yml/pkgdown.yml b/conda/env/yml/pkgdown.yml index 1e6f2840..54bcb872 100644 --- a/conda/env/yml/pkgdown.yml +++ b/conda/env/yml/pkgdown.yml @@ -4,7 +4,7 @@ channels: - bioconda - conda-forge dependencies: - - pcgr::r-pcgrr ==1.0.1.9015 # versioned by bump2version + - pcgr::r-pcgrr ==1.4.1.9014 # versioned by bump2version - r-pkgdown - r-readr - pandoc diff --git a/conda/recipe/pcgr/meta.yaml b/conda/recipe/pcgr/meta.yaml index 693ebe40..6c6fe03a 100644 --- a/conda/recipe/pcgr/meta.yaml +++ b/conda/recipe/pcgr/meta.yaml @@ -1,6 +1,6 @@ package: name: pcgr - version: 1.0.1.9015 # versioned by bump2version + version: 1.4.1.9014 # versioned by bump2version source: path: ../../.. diff --git a/conda/recipe/pcgrr/meta.yaml b/conda/recipe/pcgrr/meta.yaml index 20fe55cf..4b02227d 100644 --- a/conda/recipe/pcgrr/meta.yaml +++ b/conda/recipe/pcgrr/meta.yaml @@ -1,6 +1,6 @@ package: name: r-pcgrr - version: 1.0.1.9015 # versioned by bump2version + version: 1.4.1.9014 # versioned by bump2version source: path: ../../../pcgrr diff --git a/pcgr/_version.py b/pcgr/_version.py index b78169f6..f4345bbd 100644 --- a/pcgr/_version.py +++ b/pcgr/_version.py @@ -1,2 +1,2 @@ # versioned by bump2version -__version__ = '1.0.1.9015' +__version__ = '1.4.1.9014' diff --git a/pcgrr/DESCRIPTION b/pcgrr/DESCRIPTION index 0bb34dcf..ebfd4de4 100644 --- a/pcgrr/DESCRIPTION +++ b/pcgrr/DESCRIPTION @@ -1,7 +1,7 @@ Package: pcgrr Type: Package Title: Personal Cancer Genome ReporteR -Version: 1.0.1.9015 +Version: 1.4.1.9014 Authors@R: c(person(given = "Sigve", family = "Nakken", diff --git a/pcgrr/vignettes/installation.Rmd b/pcgrr/vignettes/installation.Rmd index c0bc64c5..ba33c0b4 100644 --- a/pcgrr/vignettes/installation.Rmd +++ b/pcgrr/vignettes/installation.Rmd @@ -13,7 +13,7 @@ output: rmarkdown::html_document ```bash cd /Users/you/dir4/conda -PCGR_VERSION="1.0.1.9015" +PCGR_VERSION="1.4.1.9014" PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/" PLATFORM="linux" # or "osx" @@ -143,7 +143,7 @@ following example: cd /Users/you/dir4/conda PLATFORM="osx-64" # or "linux-64" -PCGR_VERSION="1.0.1.9015" +PCGR_VERSION="1.4.1.9014" PCGR_REPO="https://raw.githubusercontent.com/sigven/pcgr/v${PCGR_VERSION}/conda/env/lock/" PLATFORM="linux" # or "osx" @@ -233,7 +233,7 @@ docker container run -it --rm \ -v /Users/you/dir1/data:/root/pcgr_refdata \ -v /Users/you/dir2/pcgr_inputs:/root/pcgr_inputs \ -v /Users/you/dir3/pcgr_outputs:/root/pcgr_outputs \ - sigven/pcgr:1.0.1.9015 \ + sigven/pcgr:1.4.1.9014 \ pcgr \ --input_vcf "/root/pcgr_inputs/tumor_sample.BRCA.vcf.gz" \ --vep_dir "/root/vep/.vep" \ diff --git a/pyproject.toml b/pyproject.toml index 35db73c2..7d50ee1b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,7 +5,7 @@ build-backend = "setuptools.build_meta" [project] name = "pcgr" -version = "1.0.1.9015" # versioned by bump2version +version = "1.4.1.9014" # versioned by bump2version description = "Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine" authors = [ {name = "Sigve Nakken", email = "sigven@gmail.com"},