pyproject.toml

[build-system]
requires = ["setuptools >= 61.0"]
build-backend = "setuptools.build_meta"


[project]
name = "pcgr"
version = "2.1.2" # versioned by bump2version
description = "Personal Cancer Genome Reporter (PCGR) - variant interpretation for precision cancer medicine"
authors = [
    {name = "Sigve Nakken", email = "sigven@gmail.com"},
    ]
maintainers = [
    {name = "Sigve Nakken", email = "sigven@gmail.com"},
    {name = "Peter Diakumis", email = "peterdiakumis@gmail.com"},
    ]
readme = "README.md"
license = {file = "LICENSE"}
keywords = ["cancer", "genomics", "pcgr"]
classifiers = [
    "License :: OSI Approved :: MIT License",
    "Development Status :: 5 - Production/Stable",
    "Intended Audience :: Science/Research",
    "Operating System :: MacOS :: MacOS X",
    "Operating System :: POSIX",
    "Operating System :: Unix",
    "Programming Language :: Python :: 3",
    "Programming Language :: R",
    "Topic :: Scientific/Engineering :: Bio-Informatics",
    ]


[project.urls]
Homepage = "https://sigven.github.io/pcgr/"
Documentation = "https://sigven.github.io/pcgr/"
Repository = "https://github.com/sigven/pcgr"
Changelog = "https://sigven.github.io/pcgr/articles/CHANGELOG.html"


[project.scripts]
pcgr = "pcgr.main:cli"
cpsr = "pcgr.cpsr:main"


[tool.setuptools.packages]
find = {}


[tool.setuptools]
script-files = [
    "scripts/cpsr_validate_input.py",
    "scripts/pcgr_summarise.py",
    "scripts/pcgr_validate_input.py",
    "scripts/pcgr_vcfanno.py",
    "scripts/pcgrr.R",
    "scripts/cpsr.R",
    ]