setup.py

import os
import re
import sys

from setuptools import find_packages, setup

py_version = sys.version_info[:2]
if py_version < (3, 6):
    raise RuntimeError("MAmotif requires Python 3.6+ to install!")

description = "An integrative toolkit for detecting cell type-specific " \
              "regulators"

pkg_dir = os.path.abspath(os.path.dirname(__file__))

with open(os.path.join(pkg_dir, 'mamotif', '__init__.py')) as fin:
    version = re.search(r"__version__ = '(.*?)'", fin.read()).group(1)

with open(os.path.join(pkg_dir, 'README.rst')) as fin:
    long_description = fin.read()

install_requires = [
    "numpy>=1.15",
    "scipy>=1.0",
    "MAnorm>=1.3.0",
    "motifscan>=1.2.0"
]

extras_require = {
    "test": ["pytest>=4.0.0",
             "pytest-cov>=2.8.0"],
    "docs": ["sphinx>=2.0.0",
             "sphinx_rtd_theme"]
}

classifiers = [
    "Development Status :: 5 - Production/Stable",
    'Environment :: Console',
    'Intended Audience :: Science/Research',
    "License :: OSI Approved :: BSD License",
    "Operating System :: Unix",
    "Operating System :: POSIX",
    "Operating System :: MacOS",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.6",
    "Programming Language :: Python :: 3.7",
    "Programming Language :: Python :: 3.8",
    "Topic :: Scientific/Engineering :: Bio-Informatics"
]

setup(name="MAmotif",
      version=version,
      description=description,
      long_description=long_description,
      url="https://github.com/shao-lab/MAmotif",
      project_urls={
          "Bug Tracker": "https://github.com/shao-lab/MAmotif/issues",
          "Documentation": "https://mamotif.readthedocs.io",
          "Source Code": "https://github.com/shao-lab/MAmotif",
      },
      author="Hayden Sun",
      author_email="sunhongduo@picb.ac.cn",
      license='BSD',
      packages=find_packages(),
      entry_points={"console_scripts": ["mamotif=mamotif.cli.main:main"]},
      python_requires=">=3.6",
      install_requires=install_requires,
      extras_require=extras_require,
      classifiers=classifiers,
      zip_safe=False,
      )