Update 8-11-2021
- Bug fix for
get.region()function - Function to batch-calculate brain region areas for a project (default calculates area in microns^2 for 20x imaging)-
region.area.loop()
Update 3-30-2021
- Bug fixes for registration loop, duplicate cleanup, and forward warp
- Function to count segmented cells before and after duplicate cleanup -
cell_counter() - Concatenation function to merge multiple datasets -
concatenate() - Function to compile cell counts from multiple datasets into one document -
cell_count_compilation() - Function to calculate group data from multiple datasets -
get_groups() - Voxelization function to allow users to run a voxel-based analysis, in addition to SMART's conventional region-based analysis, and generate cell density heatmaps -
voxelize() - Function to run statistical tests on voxelized datasets -
voxel_stats()
Update 8-6-2019
- Added link to SMART YouTube tutorials in the ‘Example data & references’ page. Go check it out!
Update 7-23-2019
- Uploaded a new standardized reference PDF in the example data page.
- New entry made in the Caveats page.
Update 2-28-2019
- Added the new data visualization function
get_table().
Update 1-30-2019
- Updated the visuals in the
brainmorph()function and added more user plotting options.
Patch & update 1-26-2019
- In the
choice()function, the atlas argument was added. atlas allows users to automatically pull up the appropriate atlas plates when the choice game is played. - A bug was fixed in
registration2()andregi_loop()where users accidentally enter no numbers during correspondence point modifications and R crashes.