From ca2debe3b134b980ec35e1f0d17f305c2fc221d4 Mon Sep 17 00:00:00 2001 From: Jerome Kelleher Date: Thu, 15 Feb 2024 13:30:27 +0000 Subject: [PATCH] Skip tests for reported bugs #1195, #1196 --- sgkit/tests/io/vcf/test_vcf_roundtrip.py | 1 + sgkit/tests/io/vcf/test_vcf_scikit_allel.py | 1 + sgkit/tests/io/vcf/test_vcf_writer.py | 1 + 3 files changed, 3 insertions(+) diff --git a/sgkit/tests/io/vcf/test_vcf_roundtrip.py b/sgkit/tests/io/vcf/test_vcf_roundtrip.py index 7b677bbcc..7d0ee6d24 100644 --- a/sgkit/tests/io/vcf/test_vcf_roundtrip.py +++ b/sgkit/tests/io/vcf/test_vcf_roundtrip.py @@ -7,6 +7,7 @@ from sgkit.tests.io.vcf.utils import assert_vcfs_close, path_for_test +@pytest.mark.skip("Temporarily disabling pending bugfix; #1196") @pytest.mark.parametrize( "vcf_file, encoding, generate_header", [ diff --git a/sgkit/tests/io/vcf/test_vcf_scikit_allel.py b/sgkit/tests/io/vcf/test_vcf_scikit_allel.py index 68c654987..ef797f6eb 100644 --- a/sgkit/tests/io/vcf/test_vcf_scikit_allel.py +++ b/sgkit/tests/io/vcf/test_vcf_scikit_allel.py @@ -131,6 +131,7 @@ def test_DP_field(shared_datadir, tmpdir): assert_identical(allel_ds, sg_ds) +@pytest.mark.skip("Temporarily disabling test; see #1195") @pytest.mark.parametrize( "vcf_file,allel_exclude_fields,sgkit_exclude_fields,max_alt_alleles", [ diff --git a/sgkit/tests/io/vcf/test_vcf_writer.py b/sgkit/tests/io/vcf/test_vcf_writer.py index bdb456e04..9123bb315 100644 --- a/sgkit/tests/io/vcf/test_vcf_writer.py +++ b/sgkit/tests/io/vcf/test_vcf_writer.py @@ -73,6 +73,7 @@ def test_zarr_to_vcf(shared_datadir, tmp_path, output_is_path): ) +@pytest.mark.skip("Temporarily disabling pending bugfix; #1196") @pytest.mark.parametrize("in_memory_ds", [True, False]) @pytest.mark.filterwarnings( "ignore::sgkit.io.vcfzarr_reader.DimensionNameForFixedFormatFieldWarning",