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This document is part of the BioCompute Object User Guide

Back to BCO domains

2.6 Parametric Domain "parametric_domain"

This represents the list of NON-default parameters customizing the computational flow which can affect the output of the calculations. These fields can be custom to each kind of analysis and are tied to a particular pipeline implementation. The parametric_domain is not used for running/reproducing a bco e.g. not used by the execution_domain. It is recommended these feilds be generated automatically, but that may not allways be possible. Please refer to documentation of individual scripts and specific BCO descriptions for details. While this domain is NOT required, it is reccommended that it be populated.

"parametric_domain": [
    {"param": "seed", "value": "14", "step": "1"},
    {"param":"minimum_match_len", "value": "66", "step": "1"},
    {"param": "divergence_threshold_percent", "value": 0.30, "step": "1"},
    {"param": "minimum_coverage", "value": "15", "step": "2"},
    {"param": "freq_cutoff", "value": 0.10, "step": "2"}
]