From f4df4e191071ab533bf54cb34a8970ef2ab6bb09 Mon Sep 17 00:00:00 2001 From: Dominik Date: Tue, 28 Nov 2023 14:12:57 -0800 Subject: [PATCH] remove old reference --- .gitignore | 1 + notebooks/manuscript_data.ipynb | 3 --- 2 files changed, 1 insertion(+), 3 deletions(-) diff --git a/.gitignore b/.gitignore index f5873308..ba695e19 100644 --- a/.gitignore +++ b/.gitignore @@ -8,3 +8,4 @@ palantir.egg-info/ notebooks/testing.ipynb dist/ .vscode/ +data/ diff --git a/notebooks/manuscript_data.ipynb b/notebooks/manuscript_data.ipynb index 2277e576..945f1cde 100644 --- a/notebooks/manuscript_data.ipynb +++ b/notebooks/manuscript_data.ipynb @@ -26,9 +26,6 @@ "9. `.uns['palantir_branch_probs_cell_types']`: Labels for Palantir branch probabilities.\n", "10. `.uns['ct_colors']`: Color codes for cell types, as used in the manuscript.\n", "11. `.uns['cluster_colors']`: Color codes for cell clusters, as used in the manuscript.\n", - "12. `.varm['mast_diff_res_pval']`: MAST algorithm p-values for differential expression analysis across clusters.\n", - "13. `.varm['mast_diff_res_statistic']`: Statistical values from MAST for differential expression.\n", - "14. `.uns['mast_diff_res_columns']`: Column names for MAST differential expression results.\n", "\n", "## Python Code for Data Access:" ]