Merge pull request #267 from seqan/actions/update_cpm_package_lock #361
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Coverage | |
| on: | |
| push: | |
| branches: | |
| - 'main' | |
| pull_request: | |
| types: | |
| - unlabeled | |
| workflow_dispatch: | |
| concurrency: | |
| group: coverage-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: false | |
| env: | |
| SHARG_NO_VERSION_CHECK: 1 | |
| TZ: Europe/Berlin | |
| defaults: | |
| run: | |
| shell: bash -Eeuxo pipefail {0} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| name: ${{ matrix.compiler }} | |
| if: github.repository_owner == 'seqan' || github.event_name == 'workflow_dispatch' || github.event.label.name == 'lint' | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| compiler: ["gcc-14"] | |
| container: | |
| image: ghcr.io/seqan/${{ matrix.compiler }} | |
| volumes: | |
| - /home/runner:/home/runner | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Load ccache | |
| uses: actions/cache@v4 | |
| with: | |
| path: /home/runner/.ccache | |
| key: ccache-${{ runner.os }}-${{ github.workflow }}-${{ matrix.compiler }}-${{ github.ref }} | |
| - name: Configure tests | |
| run: | | |
| mkdir build && cd build | |
| cmake .. -DCMAKE_BUILD_TYPE=Coverage \ | |
| -DCMAKE_CXX_FLAGS="-Werror -Wno-interference-size" | |
| make gtest_main | |
| - name: Build tests | |
| working-directory: build | |
| run: | | |
| ccache -z | |
| make -k api_test cli_test display_layout measure_hyperloglog | |
| ccache -svvx | |
| - name: Run tests | |
| working-directory: build | |
| run: ctest . -j --output-on-failure | |
| - name: Generate coverage report | |
| run: | | |
| gcovr --root ${GITHUB_WORKSPACE}/test/coverage \ | |
| ${GITHUB_WORKSPACE}/build \ | |
| --filter ${GITHUB_WORKSPACE}/include \ | |
| --filter ${GITHUB_WORKSPACE}/src \ | |
| --exclude ${GITHUB_WORKSPACE}/src/util \ | |
| --exclude-lines-by-pattern '^\s*$' \ | |
| --exclude-lines-by-pattern '^\s*};$' \ | |
| --exclude-lines-by-pattern '^\s*\.[^\s]* = .*[\n,]$' \ | |
| --exclude-lines-by-pattern '^\s*\.[^\s]* = .*}\);$' \ | |
| --exclude-lines-by-pattern '^\s*\.[^\s]* =(\s+\".*\")+' \ | |
| --exclude-unreachable-branches \ | |
| --exclude-throw-branches \ | |
| --exclude-noncode-lines \ | |
| -j \ | |
| --cobertura \ | |
| --output ${GITHUB_WORKSPACE}/build/coverage_report.xml | |
| - name: Submit coverage report | |
| uses: codecov/[email protected] | |
| with: | |
| files: build/coverage_report.xml | |
| fail_ci_if_error: false |