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[submodule "src/ingest-pipeline/airflow/dags/cwl/codex-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/codex-pipeline
url = https://github.com/hubmapconsortium/codex-pipeline
[submodule "src/ingest-pipeline/submodules/ingest-validation-tools"]
path = src/ingest-pipeline/submodules/ingest-validation-tools
url = https://github.com/hubmapconsortium/ingest-validation-tools
[submodule "src/ingest-pipeline/airflow/dags/cwl/portal-containers"]
path = src/ingest-pipeline/airflow/dags/cwl/portal-containers
url = https://github.com/hubmapconsortium/portal-containers
[submodule "src/ingest-pipeline/airflow/dags/cwl/salmon-rnaseq"]
path = src/ingest-pipeline/airflow/dags/cwl/salmon-rnaseq
url = https://github.com/hubmapconsortium/salmon-rnaseq
[submodule "src/ingest-pipeline/airflow/dags/cwl/sc-atac-seq-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/sc-atac-seq-pipeline
url = https://github.com/hubmapconsortium/sc-atac-seq-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/ome-tiff-pyramid"]
path = src/ingest-pipeline/airflow/dags/cwl/ome-tiff-pyramid
url = https://github.com/hubmapconsortium/ome-tiff-pyramid
[submodule "src/ingest-pipeline/airflow/dags/cwl/sci-atac-seq-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/sci-atac-seq-pipeline
url = https://github.com/hubmapconsortium/sc-atac-seq-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/bulk-atac-seq"]
path = src/ingest-pipeline/airflow/dags/cwl/bulk-atac-seq
url = https://github.com/hubmapconsortium/sc-atac-seq-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/sn-atac-seq-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/sn-atac-seq-pipeline
url = https://github.com/hubmapconsortium/sc-atac-seq-pipeline
[submodule "src/ingest-pipeline/submodules/ingest-validation-tests"]
path = src/ingest-pipeline/submodules/ingest-validation-tests
url = https://github.com/hubmapconsortium/ingest-validation-tests
[submodule "src/ingest-pipeline/airflow/dags/cwl/sprm"]
path = src/ingest-pipeline/airflow/dags/cwl/sprm
url = https://github.com/hubmapconsortium/sprm
[submodule "src/ingest-pipeline/submodules/manual-data-ingest"]
path = src/ingest-pipeline/submodules/manual-data-ingest
url = https://github.com/hubmapconsortium/manual-data-ingest.git
[submodule "src/ingest-pipeline/airflow/dags/cwl/celldive-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/celldive-pipeline
url = https://github.com//hubmapconsortium/celldive-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/azimuth-annotate"]
path = src/ingest-pipeline/airflow/dags/cwl/azimuth-annotate
url = https://github.com/hubmapconsortium/azimuth-annotate
[submodule "src/ingest-pipeline/airflow/dags/cwl/cfde-bdbag"]
path = src/ingest-pipeline/airflow/dags/cwl/cfde-bdbag
url = https://github.com/hubmapconsortium/cfde-bdbag.git
[submodule "src/ingest-pipeline/submodules/py-hubmapbags"]
path = src/ingest-pipeline/submodules/py-hubmapbags
url = https://github.com/hubmapconsortium/py-hubmapbags.git
[submodule "src/ingest-pipeline/airflow/dags/cwl/pas-ftu-segmentation-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/pas-ftu-segmentation-pipeline
url = https://github.com/hubmapconsortium/pas-ftu-segmentation-pipeline
[submodule "src/ingest-pipeline/submodules/hubmap-inventory"]
path = src/ingest-pipeline/submodules/hubmap-inventory
url = https://github.com/hubmapconsortium/hubmap-inventory.git
[submodule "src/ingest-pipeline/airflow/dags/cwl/create-vis-symlink-archive"]
path = src/ingest-pipeline/airflow/dags/cwl/create-vis-symlink-archive
url = https://github.com/hubmapconsortium/create-vis-symlink-archive.git
[submodule "src/ingest-pipeline/airflow/dags/cwl/mibi-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/mibi-pipeline
url = https://github.com/hubmapconsortium/mibi-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/multiome-rna-atac-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/multiome-rna-atac-pipeline
url = https://github.com/hubmapconsortium/multiome-rna-atac-pipeline
[submodule "src/ingest-pipeline/airflow/dags/cwl/visium-pipeline"]
path = src/ingest-pipeline/airflow/dags/cwl/visium-pipeline
url = https://github.com/hubmapconsortium/visium-pipeline