Merge pull request #268 from sennetconsortium/tjmadonna/229-remove-fu…

…nctions-that-reference-data_types Tjmadonna/229 remove functions that reference data types
sennetconsortium · Feb 2, 2024 · be09c30 · be09c30
2 parents 5026a28 + 3b67aeb
commit be09c30
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Showing 4 changed files with 2 additions and 361 deletions.
diff --git a/src/lib/datacite_doi_helper.py b/src/lib/datacite_doi_helper.py
@@ -8,7 +8,6 @@
 from flask import Flask
 from api.datacite_api import DataCiteApi
 from hubmap_sdk import EntitySdk
-from lib.dataset_helper import DatasetHelper
 from hubmap_commons.exceptions import HTTPException
 import ast
 
@@ -301,10 +300,6 @@ def update_dataset_after_doi_published(self, dataset_uuid: str, doi_name: str, e
             entity = entity_api.get_entity_by_id(dataset_uuid)
             dataset = vars(entity)
 
-            #logger.debug(dataset)
-
-            dataset_helper = DatasetHelper()
-
             data_cite_doi_helper = DataCiteDoiHelper()
 
             try:

diff --git a/src/lib/dataset_helper.py b/src/lib/dataset_helper.py
diff --git a/src/routes/entity_CRUD/__init__.py b/src/routes/entity_CRUD/__init__.py
@@ -746,7 +746,6 @@ def publish_datastage(identifier):
         if r.ok is False:
             raise ValueError("Cannot find specimen with identifier: " + identifier)
         dataset_uuid = json.loads(r.text)['hm_uuid']
-        # return dataset_helper.determine_sources_to_reindex(identifier, user_info, dataset_uuid)
         is_primary = dataset_is_primary(dataset_uuid)
         suspend_indexing_and_acls = string_helper.isYes(request.args.get('suspend-indexing-and-acls'))
         no_indexing_and_acls = False