_site.yml

name: 'seandavi(s12): Courses and Tutorials for Data Science, Genomics, and Big Data'
navbar:
  title: 'seandavi(s12): Courses and Tutorials'
  icon: fa-home
  type: inverse
  left:
  - text: Home
    href: index.html
  - text: About
    href: about.html
  right:
  - icon: fa-cogs
    text: setup
    href: setup.html
  - icon: ion-easel
    text: Slides
    menu:
    - text: Motivation for using R
      href: motivation_for_R_slides.html
    - text: Introduction to Bioconductor
      href: http://bit.ly/bioc_cshl_2019
    - text: Advanced Bioconductor Overview
      href: https://drive.google.com/file/d/1txUz-a84VVxiB1ouv24ujL2DSTfxgblL/view?usp=sharing
    - text: Machine Learning hands-on
      href: MachineLearning.html
    - text: Machine Learning Intro
      href: https://docs.google.com/presentation/d/1PKP39ze3kATKCXxx-AUuDdI4FUpA85UQJxDMhXIK3Mk/edit?usp=sharing
  - icon: fa-question fa-lg
    text: Misc.
    menu:
    - text: Further resources
      href: further_resources.html
    - text: Source code for this site
      href: https://github.com/seandavi/ITR
    - text: Download materials
      href: https://github.com/seandavi/ITR/archive/master.zip
output:
  html_document:
    theme: default
    highlight: textmate
    toc: yes
    toc_depth: 3
    toc_float:
      collapsed: no
    fig_align: center
    css: https://maxcdn.bootstrapcdn.com/font-awesome/4.5.0/css/font-awesome.min.css
    include:
      after_body: google_analytics.html
    lib_dir: site_libs
    self_contained: no
exclude: 
  - F_epigenomic_ranges.Rmd
  - "*sqlite"
  - "*gtf.gz"
  - "*~"
  - ".#*"
  - Makefile
include: "*.Rmd"
output_dir: docs