How to plot large deletions region?

[paraunie]

Dear author, thank you for your software. Plotsr can be used to plot syntenic regions, inversions, translocations regions and duplications regions. But, I couldn't plot large deletions regions between two bacterial genome with plotsr? Could u give me same advice?
Thank you~

[mnshgl0110]

Deletions are effectively absence of alignments, so it is not possible to plot alignments for them. But, if there are specific deletions that you would like to highlight then you can add them in the markers.bed file.