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iSNP.h
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iSNP.h
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using namespace std:
class iSNP
{
public:
struct self
{
std::string ecotype = "";
std::string chromosome = "";
unsigned long position = 0;
std::string stype = "intergeneric";
std::string gene_id = "NA";
unsigned long gene_pos=0;
unsigned long cds_pos=0;
unsigned long codon_pos = 0;
unsigned long ns_change = 0;
unsigned long new_stop = 0;
unsigned long lost_stop = 0;
unsigned long splicechange = 0;
std::string ref_base="";
std::string new_base="";
std::string ref_aa ="";
std::string new_aa="";
//map<std::string, std::string>domain_change;
unsigned long support = 0;
double concordance = 0;
double quality = 0;
unsigned long peak_distance = 999999999;
double marker_ratio = 0;
std::string source = "IlluminaGA2";
};
}