From 1b669c2dde5cfb189bf96ea849e55fa69b86e455 Mon Sep 17 00:00:00 2001 From: AustinHartman Date: Tue, 20 Sep 2022 10:41:14 -0400 Subject: [PATCH 1/4] bump matrix version --- DESCRIPTION | 6 +++--- NEWS.md | 4 ++++ 2 files changed, 7 insertions(+), 3 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 12621668..8f824f9d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: SeuratObject Type: Package Title: Data Structures for Single Cell Data -Version: 4.1.1 -Date: 2022-08-29 +Version: 4.1.2 +Date: 2022-09-20 Authors@R: c( person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')), person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')), @@ -37,7 +37,7 @@ Imports: future.apply, grDevices, grid, - Matrix (>= 1.3.3), + Matrix (>= 1.5.0), methods, progressr, Rcpp (>= 1.0.5), diff --git a/NEWS.md b/NEWS.md index 798bd40d..2638413b 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,7 @@ +# SeuratObject 4.1.2 +## Changed +- Bump required Matrix version to >= 1.5.0 + # SeuratObject 4.1.1 ## Changed - Update sparse matrix coersions due to Matrix deprecations From b350d5d18357f8a2e23bbe24cf6549eab86e2ff3 Mon Sep 17 00:00:00 2001 From: AustinHartman Date: Tue, 20 Sep 2022 11:00:02 -0400 Subject: [PATCH 2/4] update action --- .github/workflows/build-and-deploy.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/build-and-deploy.yaml b/.github/workflows/build-and-deploy.yaml index d8794e92..11833bb5 100644 --- a/.github/workflows/build-and-deploy.yaml +++ b/.github/workflows/build-and-deploy.yaml @@ -27,7 +27,7 @@ jobs: echo 'options(HTTPUserAgent = sprintf("R/%s R (%s)", getRversion(), paste(getRversion(), R.version$platform, R.version$arch, R.version$os)))' | sudo tee -a /etc/R/Rprofile.site - name: Install dependencies run: | - install.packages(c("remotes", "pkgdown")) + install.packages(c("remotes", "pkgdown", "Matrix")) remotes::install_deps() shell: Rscript {0} - name: Install package From e52370777c7299eabcf72610bed271049ed9c928 Mon Sep 17 00:00:00 2001 From: AustinHartman Date: Tue, 20 Sep 2022 11:02:40 -0400 Subject: [PATCH 3/4] update cran comments --- cran-comments.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cran-comments.md b/cran-comments.md index e086d4dd..bff93c50 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,4 +1,4 @@ -# SeuratObject v4.1.1 +# SeuratObject v4.1.2 ## Test environments * local ubuntu 20.04 install, R 4.1.3 From ca5a9745575ea72c4f20dc064571beccbc16ceda Mon Sep 17 00:00:00 2001 From: AustinHartman Date: Tue, 20 Sep 2022 11:30:33 -0400 Subject: [PATCH 4/4] set minimum sp version --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 8f824f9d..4f6ae81d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -41,7 +41,7 @@ Imports: methods, progressr, Rcpp (>= 1.0.5), - sp, + sp (>= 1.5.0), rgeos, rlang (>= 0.4.7), stats,