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DESCRIPTION
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DESCRIPTION
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Package: brainImageR
Type: Package
Title: A Framework for visualizing gene set enrichment throughout
neurodevelopment
Version: 1.1.2
Authors@R: c(person("Slinker", role = c("aut","cre"), email = "[email protected]"))
Author: Sara Linker [aut, cre]
Maintainer: Sara B Linker <[email protected]>
Description: BrainImageR is a package that provides the user with information of where in the human brain their gene set corresponds to. This is provided both as a continuous variable and as a easily-interpretable image. BrainImageR has additional functionality of identifying approximately when in developmental time that a gene expression dataset corresponds to. Both the spatial gene set enrichment and the developmental time point prediction are assessed in comparison to the Allen Brain Atlas reference data.
License: CC BY-SA 4.0
LazyData: TRUE
biocViews: Software, Transcription, GeneSetEnrichment, GeneExpression, GenePrediction
VignetteBuilder: knitr
Depends: R (>= 3.5)
Imports:
BiocGenerics,
ExperimentHub,
ggplot2,
grDevices,
grid,
gridExtra,
methods,
randomForest,
RColorBrewer,
stats,
testthat
Suggets:
BiocStyle,
utils
RoxygenNote: 6.1.1
Suggests: knitr,
rmarkdown
URL: https://github.com/saralinker/brainImageR
BugReports: https://github.com/saralinker/brainImageR/issues