No such variable: ch_index

[muffato]

Description of the bug

I got that error almost immediately when running the test_full profile, before submitting any job.

Command used and terminal output

$ nextflow run /nfs/users/nfs_m/mm49/workspace/tol-it/nextflow/sanger-tol/releases/variantcalling-1.1.1 -profile test_full,singularity,sanger

ERROR ~ No such variable: ch_index

 -- Check script '/nfs/users/nfs_m/mm49/workspace/tol-it/nextflow/sanger-tol/releases/variantcalling-1.1.1/./workflows/variantcalling.nf' at line: 108 or see '.nextflow.log' file for more de

Relevant files

No response

System information

No response