Pipeline finishes without running DeepVariant when fasta file named with .fa not .fasta

[gq1]

Description of the bug

finish successfully but without DeepVariant subworkflow.

Problem at this line:

variantcalling/subworkflows/local/input_filter_split.nf

Line 57 in 15a1475

.map { mata, fai -> [ fai.baseName - '.fasta', fai ] }

Command used and terminal output

nextflow run sanger-tol/variantcalling -r 1.1.0 --input input_file_Tithorea_tarricina.csv --fasta /lustre/scratch125/tol/teams/meier/analysis/karin/ithomiini_clade/01_data/data_renamed/ilTitTari1.1.primary.fa -profile singularity,sanger --align

Relevant files

No response

System information

No response