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Add calculation for heterozygosity #39

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priyanka-surana opened this issue Jun 27, 2023 · 1 comment · Fixed by #62
Closed

Add calculation for heterozygosity #39

priyanka-surana opened this issue Jun 27, 2023 · 1 comment · Fixed by #62
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feature Requests for new features user request Requests made by users and public
Milestone
1.1.0

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@priyanka-surana
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priyanka-surana commented Jun 27, 2023 •
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Description of feature

Implement the following command either using the nf-core module.

vcftools --vcf $vcf --het --out $prefix
  • Variant file is input, it can be vcf, vcf.gz or bcf

This feature requested by Kamil Jaron and Alex Twyford
@priyanka-surana priyanka-surana added enhancement Improvement of the existing features feature Requests for new features user request Requests made by users and public labels Jun 27, 2023
@priyanka-surana priyanka-surana added this to the 1.1.0 milestone Jun 27, 2023
@gq1
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gq1 commented Nov 8, 2023

#62

@muffato muffato linked a pull request Nov 10, 2023 that will close this issue
VCFTOOLs site_pi and het options #62
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@muffato muffato moved this from Todo to In Progress in Genome After Party Nov 10, 2023
@gq1 gq1 closed this as completed Nov 16, 2023
@github-project-automation github-project-automation bot moved this from In Progress to Done in Genome After Party Nov 16, 2023
@muffato muffato moved this to Done in variantcalling Jun 5, 2024
@muffato muffato removed the enhancement Improvement of the existing features label Jun 17, 2024
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feature Requests for new features user request Requests made by users and public
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Genome After Party
Status: Done
variantcalling
Status: Done
Milestone
1.1.0
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VCFTOOLs site_pi and het options sanger-tol/variantcalling
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@muffato @gq1 @priyanka-surana