From eaed3bd2e1b7b7c31491d75955f7389044d202f6 Mon Sep 17 00:00:00 2001
From: Guoying Qi <729395+gq1@users.noreply.github.com>
Date: Tue, 25 Jun 2024 10:17:03 +0100
Subject: [PATCH] Update README.md, remove align flag

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 3a344df..8722707 100644
--- a/README.md
+++ b/README.md
@@ -45,7 +45,7 @@ Steps involved:
    nextflow run sanger-tol/variantcalling -profile test,YOURPROFILE --outdir <OUTDIR>
 
    # for unaligned reads
-   nextflow run sanger-tol/variantcalling -profile test_align,YOURPROFILE --align --outdir <OUTDIR>
+   nextflow run sanger-tol/variantcalling -profile test_align,YOURPROFILE --outdir <OUTDIR>
 
    ```