diff --git a/modules/local/graphoverallcoverage.nf b/modules/local/graphoverallcoverage.nf index b8cc8777..2d535bb6 100755 --- a/modules/local/graphoverallcoverage.nf +++ b/modules/local/graphoverallcoverage.nf @@ -2,7 +2,9 @@ process GRAPHOVERALLCOVERAGE { tag "$meta.id" label "process_single" - container 'quay.io/sanger-tol/cramfilter_bwamem2_minimap2_samtools_perl:0.001-c1' + container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? + 'https://depot.galaxyproject.org/singularity/mulled-v2-1a6fe65bd6674daba65066aa796ed8f5e8b4687b:688e175eb0db54de17822ba7810cc9e20fa06dd5-0' : + 'biocontainers/mulled-v2-1a6fe65bd6674daba65066aa796ed8f5e8b4687b:688e175eb0db54de17822ba7810cc9e20fa06dd5-0' }" input: tuple val(meta), path(bed)