diff --git a/assets/local_testing/nxOscDF5033.yaml b/assets/local_testing/nxOscDF5033.yaml index 8c2547c1..6754146d 100755 --- a/assets/local_testing/nxOscDF5033.yaml +++ b/assets/local_testing/nxOscDF5033.yaml @@ -5,11 +5,10 @@ assembly: classT: nematode asmVersion: 1 gevalType: DTOL -reference_file: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta -#/lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta +reference_file: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta assem_reads: - pacbio: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/ - hic: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/full/ + pacbio: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/pacbio/fasta/ + hic: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/full/ supplementary: path alignment: data_dir: /lustre/scratch123/tol/resources/treeval/gene_alignment_data/ diff --git a/assets/local_testing/nxOscSUBSET.yaml b/assets/local_testing/nxOscSUBSET.yaml index fcc726b1..45e3a554 100755 --- a/assets/local_testing/nxOscSUBSET.yaml +++ b/assets/local_testing/nxOscSUBSET.yaml @@ -5,11 +5,11 @@ assembly: classT: nematode asmVersion: 1 gevalType: DTOL -reference_file: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/assembly/draft/SUBSET_genome/Oscheius_SUBSET.fasta +reference_file: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_SUBSET/assembly/draft/SUBSET_genome/Oscheius_SUBSET.fasta #/lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/assembly/draft/DF5033.hifiasm.noTelos.20211120/DF5033.noTelos.hifiasm.purged.noCont.noMito.fasta assem_reads: - pacbio: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/genomic_data/pacbio/ - hic: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/subset/ + pacbio: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_SUBSET/genomic_data/pacbio/ + hic: /lustre/scratch123/tol/resources/nextflow/test-data/TreeValSmallData/Oscheius_DF5033/genomic_data/nxOscSpes1/hic-arima2/subset/ supplementary: path alignment: data_dir: /lustre/scratch123/tol/resources/treeval/nextflow_test_data/Oscheius_SUBSET/gene_set/