diff --git a/workflows/treeval_rapid.nf b/workflows/treeval_rapid.nf index 05032b95..0771a72d 100755 --- a/workflows/treeval_rapid.nf +++ b/workflows/treeval_rapid.nf @@ -53,9 +53,9 @@ workflow TREEVAL_RAPID { main: ch_versions = Channel.empty() - exclude_workflow_steps = params.steps ? params.steps.split(",") : "" + exclude_workflow_steps = params.steps ? params.steps.split(",") : "NONE" - full_list = ["insilico_digest", "gene_alignments", "repeat_density", "gap_finder", "selfcomp", "synteny", "read_coverage", "telo_finder", "busco", "kmer", "hic_mapping", ""] + full_list = ["insilico_digest", "gene_alignments", "repeat_density", "gap_finder", "selfcomp", "synteny", "read_coverage", "telo_finder", "busco", "kmer", "hic_mapping", "NONE"] if (!full_list.containsAll(exclude_workflow_steps)) { exit 1, "There is an extra argument given on Command Line: \n Check contents of --exclude: $exclude_workflow_steps\nMaster list is: $full_list" diff --git a/workflows/treeval_rapid_tol.nf b/workflows/treeval_rapid_tol.nf index 7fa7dcf9..4929fd16 100755 --- a/workflows/treeval_rapid_tol.nf +++ b/workflows/treeval_rapid_tol.nf @@ -53,9 +53,9 @@ workflow TREEVAL_RAPID_TOL { main: ch_versions = Channel.empty() - exclude_workflow_steps = params.exclude ? params.exclude.split(",") : "" + exclude_workflow_steps = params.exclude ? params.exclude.split(",") : "NONE" - full_list = ["insilico_digest", "gene_alignments", "repeat_density", "gap_finder", "selfcomp", "synteny", "read_coverage", "telo_finder", "busco", "kmer", "hic_mapping", ""] + full_list = ["insilico_digest", "gene_alignments", "repeat_density", "gap_finder", "selfcomp", "synteny", "read_coverage", "telo_finder", "busco", "kmer", "hic_mapping", "NONE"] if (!full_list.containsAll(exclude_workflow_steps)) { exit 1, "There is an extra argument given on Command Line: \n Check contents of --exclude: $exclude_workflow_steps\nMaster list is: $full_list"