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Embed the BAM headers from the insdcdownload pipeline #93

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muffato opened this issue Jun 17, 2024 · 0 comments · Fixed by #95
Closed

Embed the BAM headers from the insdcdownload pipeline #93

muffato opened this issue Jun 17, 2024 · 0 comments · Fixed by #95
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@tkchafin
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enhancement Improvement of the existing features user request Requests made by users and public
Milestone
1.3.0

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@muffato
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muffato commented Jun 17, 2024 •
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Add an extra pipeline parameter for a header file to be inserted in every BAM file generated by the pipeline.

In practice, we would use the header file generated by sanger-tol/insdcdownload#9
@muffato muffato converted this from a draft issue Jun 17, 2024
@muffato muffato added enhancement Improvement of the existing features user request Requests made by users and public labels Jun 17, 2024
@muffato muffato added this to the 1.3.0 milestone Jun 24, 2024
@tkchafin tkchafin linked a pull request Jun 28, 2024 that will close this issue
Option to incorporate additional metadata from provided SAM header file #95
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@muffato muffato moved this from Todo to In Progress in Genome After Party Jul 3, 2024
@tkchafin tkchafin moved this from In Progress to Done in Genome After Party Jul 22, 2024
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enhancement Improvement of the existing features user request Requests made by users and public
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Genome After Party
Status: Done
Milestone
1.3.0
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Option to incorporate additional metadata from provided SAM header file tkchafin/readmapping
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@muffato @tkchafin