From 364e6d61c3f1342a93ad928518327fb05b9f7d4f Mon Sep 17 00:00:00 2001 From: James Gilbert Date: Wed, 5 Jun 2024 10:07:53 +0100 Subject: [PATCH] Pipelines links for Pretext and Oatk --- markdown/resources/tools.md | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/markdown/resources/tools.md b/markdown/resources/tools.md index 41c629fb40..4d14333f11 100644 --- a/markdown/resources/tools.md +++ b/markdown/resources/tools.md @@ -40,6 +40,8 @@ Genomes on a Tree (GoaT), an Elasticsearch-powered datastore and search index fo Developed for _de novo_ assembly of complex plant organelle genomes using PacBio HiFi data, [Oatk](https://github.com/c-zhou/oatk) can also be used to assemble other, simpler organelle genomes such as animal mitochondria. From whole genome sequencing data input, Oatk's tools produce annotation (using profile HMMs from [OatkDB](https://github.com/c-zhou/OatkDB.git)) and cirularised graph assemblies of plastid and mitochondrial genomes. +**Pipelines:** [genomeassembly](/genomeassembly) +
## Pretext @@ -54,6 +56,8 @@ Pretext is a suite of tools used to curate the chromosome level structure of lon - [PretextSnapshot](https://github.com/sanger-tol/PretextSnapshot) - Extracts Hi-C contact map images from Pretext map files. +**Pipelines:** [genomeassembly](/genomeassembly) | [treeval](/treeval) +
## AGP / TPF Utilities