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Use the nf-core module for downloading from the NCBI #15

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muffato opened this issue Jan 18, 2024 · 0 comments
Open

Use the nf-core module for downloading from the NCBI #15

muffato opened this issue Jan 18, 2024 · 0 comments
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enhancement Improvement of the existing features good first issue Good for newcomers help wanted Open to anyone interested

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muffato commented Jan 18, 2024 •
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Description of feature

There is a nf-core module named ncbigenomedownload (based on the Python package https://github.com/kblin/ncbi-genome-download) that seems able to download all the files we want given an accession number.

That would be more sustainable than the current local module.
@muffato muffato added the enhancement Improvement of the existing features label Jan 18, 2024
@muffato muffato added the feature Requests for new features label Jun 2, 2024
@muffato muffato added good first issue Good for newcomers help wanted Open to anyone interested enhancement Improvement of the existing features and removed feature Requests for new features enhancement Improvement of the existing features labels Jun 17, 2024
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enhancement Improvement of the existing features good first issue Good for newcomers help wanted Open to anyone interested
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