diff --git a/modules/local/extract_telo.nf b/modules/local/extract_telo.nf index f78e0a3..cad234f 100755 --- a/modules/local/extract_telo.nf +++ b/modules/local/extract_telo.nf @@ -5,7 +5,7 @@ process EXTRACT_TELO { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( file ) diff --git a/modules/local/find_telomere_windows.nf b/modules/local/find_telomere_windows.nf index ac9584e..2fcd002 100755 --- a/modules/local/find_telomere_windows.nf +++ b/modules/local/find_telomere_windows.nf @@ -6,7 +6,7 @@ process FIND_TELOMERE_WINDOWS { container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/java-jdk:8.0.112--1' : - 'quay.io/biocontainers/java-jdk:8.0.112--1' }" + 'biocontainers/java-jdk:8.0.112--1' }" input: tuple val( meta ), path( file ) diff --git a/modules/local/generate_genome_file.nf b/modules/local/generate_genome_file.nf index 75c96d8..233e9ff 100755 --- a/modules/local/generate_genome_file.nf +++ b/modules/local/generate_genome_file.nf @@ -5,7 +5,7 @@ process GENERATE_GENOME_FILE { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( fai ) diff --git a/modules/local/get_largest_scaff.nf b/modules/local/get_largest_scaff.nf index 1819f4d..6348eda 100755 --- a/modules/local/get_largest_scaff.nf +++ b/modules/local/get_largest_scaff.nf @@ -6,7 +6,7 @@ process GET_LARGEST_SCAFF { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( file ) diff --git a/modules/local/getminmaxpunches.nf b/modules/local/getminmaxpunches.nf index 8dbe13d..7a42e3d 100755 --- a/modules/local/getminmaxpunches.nf +++ b/modules/local/getminmaxpunches.nf @@ -5,7 +5,7 @@ process GETMINMAXPUNCHES{ conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val(meta), path(bedfile) diff --git a/modules/local/reformat_intersect.nf b/modules/local/reformat_intersect.nf index 0842fae..1d1930c 100755 --- a/modules/local/reformat_intersect.nf +++ b/modules/local/reformat_intersect.nf @@ -5,7 +5,7 @@ process REFORMAT_INTERSECT { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( file ) diff --git a/modules/local/rename_ids.nf b/modules/local/rename_ids.nf index 545d0c4..f69f518 100755 --- a/modules/local/rename_ids.nf +++ b/modules/local/rename_ids.nf @@ -5,7 +5,7 @@ process RENAME_IDS { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( file ) diff --git a/modules/local/replace_dots.nf b/modules/local/replace_dots.nf index 0f266ca..4d12f5c 100755 --- a/modules/local/replace_dots.nf +++ b/modules/local/replace_dots.nf @@ -5,7 +5,7 @@ process REPLACE_DOTS { conda "conda-forge::coreutils=9.1" container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/ubuntu:20.04' : - 'ubuntu:20.04' }" + 'docker.io/ubuntu:20.04' }" input: tuple val( meta ), path( file )