Release 0.3 #92
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Release 0.3 #92
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only run BLAST_BLASTN if BLASTN_TAXON has an empty output
With the `-0` option, the output file ("interleaved") is empty for PacBio
because all the reads go to the "other" file. Whereas paired-reads all go to
the "interleaved" file and none to the "other" file.
The simplest is to not use the `-0` option. Then, `samtools fasta` simply sends
all the reads to the standard output.
(waiting for nf-core approval)
This simplifies connecting to the fetchngs pipeline
…uses some problems
This means that .fastq.gz will remain .fastq.gz and can then match the condition to bypass the SAMTOOLS_FASTA process. There is a pull-request for this, nf-core/modules#4230
This reverts commit 5e7d53a.
…object is a path, not a list
Since the blobdir is incrementally built, only the last version needs to be published
v0.3 - Pipeline now validated on five real genomes
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I've added another commit (aabcfc6) after realising that the nf-validation plugin doesn't allow integers on "string" types ! |
BethYates
approved these changes
Feb 11, 2024
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The only change compared to main is the PR you accepted this morning (#88) and a commit (21db9cf) in which I've bumped the version number up
PR checklist
nf-core lint).nextflow run . -profile test,docker --outdir <OUTDIR>).nextflow run . -profile debug,test,docker --outdir <OUTDIR>).docs/usage.mdis updated.docs/output.mdis updated.CHANGELOG.mdis updated.README.mdis updated (including new tool citations and authors/contributors).