diff --git a/modules/nf-core/busco/busco.diff b/modules/nf-core/busco/busco.diff new file mode 100644 index 00000000..dfa3fa05 --- /dev/null +++ b/modules/nf-core/busco/busco.diff @@ -0,0 +1,12 @@ +Changes in module 'nf-core/busco' +--- modules/nf-core/busco/main.nf ++++ modules/nf-core/busco/main.nf +@@ -1,5 +1,5 @@ + process BUSCO { +- tag "$meta.id" ++ tag "${meta.id}_${lineage}" + label 'process_medium' + + conda "bioconda::busco=5.4.3" + +************************************************************ diff --git a/nextflow_schema.json b/nextflow_schema.json index 0cd0553c..23e627a4 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -10,10 +10,7 @@ "type": "object", "fa_icon": "fas fa-terminal", "description": "Define where the pipeline should find input data and save output data.", - "required": [ - "input", - "outdir" - ], + "required": ["input", "outdir"], "properties": { "input": { "type": "string", @@ -61,11 +58,7 @@ "type": "object", "fa_icon": "fas fa-dna", "description": "Reference genome related files and options required for the workflow.", - "required": [ - "taxon", - "accession", - "fasta" - ], + "required": ["taxon", "accession", "fasta"], "properties": { "taxon": { "type": "string", @@ -90,10 +83,7 @@ "type": "object", "fa_icon": "fas fa-database", "description": "Define the location and parameters to work with databases.", - "required": [ - "uniprot", - "taxdump" - ], + "required": ["uniprot", "taxdump"], "properties": { "taxa_file": { "type": "string", @@ -115,15 +105,7 @@ }, "blastp_outext": { "type": "string", - "enum": [ - "blast", - "xml", - "txt", - "daa", - "sam", - "tsv", - "paf" - ], + "enum": ["blast", "xml", "txt", "daa", "sam", "tsv", "paf"], "description": "Extension (file format) of the output file from Diamond BLAST.", "fa_icon": "fas fa-file-circle-question", "default": "txt" @@ -251,14 +233,7 @@ "description": "Method used to save pipeline results to output directory.", "help_text": "The Nextflow `publishDir` option specifies which intermediate files should be saved to the output directory. This option tells the pipeline what method should be used to move these files. See [Nextflow docs](https://www.nextflow.io/docs/latest/process.html#publishdir) for details.", "fa_icon": "fas fa-copy", - "enum": [ - "symlink", - "rellink", - "link", - "copy", - "copyNoFollow", - "move" - ], + "enum": ["symlink", "rellink", "link", "copy", "copyNoFollow", "move"], "hidden": true }, "email_on_fail": { @@ -357,4 +332,4 @@ "$ref": "#/definitions/generic_options" } ] -} \ No newline at end of file +}