From aef0532ad888c59b7dd065f89dace640c39240b1 Mon Sep 17 00:00:00 2001 From: Matthieu Muffato Date: Mon, 1 Jul 2024 17:08:12 +0100 Subject: [PATCH] Switched to the default btk biocontainers because the pacbio one is gone All we need is Python and the yaml package --- modules/local/blobtoolkit/updatemeta.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/local/blobtoolkit/updatemeta.nf b/modules/local/blobtoolkit/updatemeta.nf index de1313d5..a5556348 100644 --- a/modules/local/blobtoolkit/updatemeta.nf +++ b/modules/local/blobtoolkit/updatemeta.nf @@ -5,7 +5,7 @@ process BLOBTOOLKIT_UPDATEMETA { if (workflow.profile.tokenize(',').intersect(['conda', 'mamba']).size() >= 1) { exit 1, "BLOBTOOLKIT_UPDATEMETA module does not support Conda. Please use Docker / Singularity / Podman instead." } - container "docker.io/pacificbiosciences/pyyaml:5.3.1" + container "docker.io/genomehubs/blobtoolkit:4.3.9" input: tuple val(meta), path(input)