sanger_test_full.yml

name: sanger-tol LSF full size tests

on:
  push:
    branches:
      - large_tower_env
  workflow_dispatch:
jobs:
  run-tower:
    name: Run LSF full size tests
    runs-on: ubuntu-latest
    steps:
      - name: Sets env vars for push
        run: |
          echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV
        if: github.event_name == 'push'

      - name: Sets env vars for workflow_dispatch
        run: |
          echo "REVISION=${{ github.sha }}" >> $GITHUB_ENV
        if: github.event_name == 'workflow_dispatch'

      - name: Launch workflow via tower
        uses: seqeralabs/action-tower-launch@v2
        with:
          workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }}
          access_token: ${{ secrets.TOWER_ACCESS_TOKEN }}
          compute_env: ${{ secrets.TOWER_COMPUTE_ENV_LARGE }}
          revision: ${{ env.REVISION }}
          workdir: ${{ secrets.TOWER_WORKDIR_PARENT }}/work/${{ github.repository }}/work-${{ env.REVISION }}
          parameters: |
            {
              "outdir": "${{ secrets.TOWER_WORKDIR_PARENT }}/results/${{ github.repository }}/results-${{ env.REVISION }}",
            }
          profiles: test_full,sanger,singularity,cleanup
      - uses: actions/upload-artifact@v3
        with:
          name: Tower debug log file
          path: |
            tower_action_*.log
            tower_action_*.json