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stored_entry.py
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stored_entry.py
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#!/usr/bin/env python3
import importlib.util
import logging
import os
import sys
import uuid
import ufun
from runnable import Runnable
class Entry(Runnable):
"An Entry is a Runnable stored in the file system"
FILENAME_parameters = 'data_axs.json'
MODULENAME_functions = 'code_axs' # the actual filename ends in .py
PREFIX_gen_entryname = 'generated_entry_'
def __init__(self, entry_path=None, parameters_path=None, module_name=None, container=None, generated_name_prefix=None, is_stored=None, **kwargs):
"Accept setting entry_path in addition to parent's parameters"
self.generated_name_prefix = generated_name_prefix or self.PREFIX_gen_entryname
self.container_object = container
if entry_path:
self.set_path(entry_path)
else:
self.entry_path = None # an obligatory placeholder
self.parameters_path = parameters_path
self.module_name = module_name or self.MODULENAME_functions
self.is_stored = is_stored if type(is_stored)==bool else os.path.exists(entry_path)
super().__init__(**kwargs)
logging.debug(f"[{self.get_name()}] Initializing the Entry with entry_path={self.entry_path}, parameters_path={self.parameters_path}, module_name={self.module_name}, generated_name_prefix={self.generated_name_prefix}")
def generate_name(self, prefix=''):
"""Generates a unique name with a given prefix
Usage examples :
axs generate_name
axs generate_name unnamed_entry_
"""
return prefix + uuid.uuid4().hex
def set_path(self, new_path):
"""Sets the path of the given Entry
Please note that the output of this method is the Entry itself, not the new_path
"""
new_path = new_path or self.name or self.generate_name( self.generated_name_prefix )
if os.path.isabs( new_path ): # absolute path
self.entry_path = new_path
elif self.container_object: # relative to container
self.entry_path = os.path.join( self.container_object.get_path( new_path ) )
else: # relative to cwd
self.entry_path = os.path.realpath( new_path )
self.parameters_path = None
self.name = None
return self
def get_path(self, file_name=None):
"""The directory path of the stored Entry, optionally joined with a given relative name.
Usage examples :
axs byname base_map , get_path
axs byname derived_map , get_path README.md
"""
def ensure_path():
if self.entry_path is None:
self.set_path(None)
return self.entry_path
if file_name:
if type(file_name)==list:
file_name = os.path.sep.join( file_name )
if os.path.isabs( file_name ):
return file_name
else:
return os.path.join(ensure_path(), file_name)
else:
return ensure_path()
def get_path_from(self, key_path):
"""A frequently needed combination of fetching a relative path from an Entry's data
and getting an absolute file path from that relative path.
Usage examples :
axs byquery package_name=numpy , get_path_from rel_packages_dir
"""
return self.get_path(self.dig(key_path))
def get_path_of(self, resource_name, strict=True):
"""Assuming the entry has contained_files{} dictionary defined,
given the resource_name maps it to the absolute path of this resource.
Also optionally checks if the path exists, raising FileNotFoundError if not.
Usage examples :
axs byquery git_repo,repo_name=mlperf_inference_git , get_path_of bert_code_root
"""
abs_path = self.get_path(self.dig(["contained_files", resource_name], safe=not strict))
if strict and not os.path.exists( abs_path ):
raise FileNotFoundError( abs_path )
return abs_path
def trim_path(self, input_path):
"""Transform path to relative-to-entry if inside entry, or absolute if outside
"""
if os.path.isabs( input_path ): # given as absolute
real_input_path = os.path.realpath( input_path )
real_entry_path_tr = os.path.realpath( self.entry_path ) + os.path.sep
if real_input_path.startswith( real_entry_path_tr ): # absolute and inside => trim
return real_input_path[ len(real_entry_path_tr): ]
else: # absolute, but outside => keep
return input_path
else: # relative, assume inside => keep
return input_path
def find_file(self, regex, looking_for_dir=False, return_full=False, topdown=True, abs_paths=False, return_all=False):
"""Find a file with the given regex inside current entry and return its relative or absolute path.
Note: it must be Python's regex, not Shell's!
Usage examples :
axs byname numpy_package_for_python3.6 , find_file 'poly.*' --return_full+ --return_all+
"""
candidates = ufun.fs_find(self.get_path(''), regex, looking_for_dir=looking_for_dir, return_full=return_full, topdown=topdown)
if not abs_paths:
candidates = [ self.trim_path(c).split( os.path.sep ) for c in candidates ] # each trimmed path is a list in our internal "portable relative path format"
if return_all:
return candidates
else:
return candidates[0]
def get_name(self):
return self.name or (self.entry_path and os.path.basename(self.entry_path))
def get_parameters_path(self):
"""Return the path to a json file that is supposed to contain loadable parameters
"""
return self.parameters_path or self.get_path( self.FILENAME_parameters )
def get_module_name(self):
return self.module_name
def get_container(self):
return self.container_object
def bypath(self, path, name=None):
"""A parameterization of MicroKernel.bypath() that is always relative to the "current" entry,
mainly used by collections.
"""
return self.get_kernel().bypath(self.get_path(path), name, container=self)
def attach(self, container=None):
"""Dispatch the request to register an entry in a container to the container.
Usage examples :
axs fresh_entry dynamically_attached , plant apple tree , attach --:=^:work_collection , save
axs byname mlperf_inference_git_recipe , attach --:=^:work_collection , save another_git_recipe
"""
if container:
self.container_object = container
else:
container = self.get_container()
if container:
container.call('add_entry_path', [self.get_path(''), self.get_name()] )
return self
def detach(self):
"""Dispatch the request to de-register an entry from a container to the container.
"""
container = self.get_container()
if container:
container.call("remove_entry_name", self.get_name() )
self.container_object = None
else:
logging.warning(f"[{self.get_name()}] was not attached to a container")
return self
def pure_data_loader(self):
"Returns the dictionary loaded or the (stringifiable) exception object"
parameters_path = self.get_parameters_path()
try:
return ufun.load_json( parameters_path )
except OSError as e:
return e
def own_functions(self):
"""Lazy-load and cache functions from the file system
Note the convention:
stored None means "not loaded yet", as in "cached value missing"
whereas stored False means "this object has no code to load", "nothing to see here".
Usage examples :
axs byname be_like , own_functions
axs byname dont_be_like , own_functions
"""
if self.own_functions_cache==None: # lazy-loading condition
entry_path = self.get_path()
if entry_path:
module_name = self.get_module_name()
file_path = os.path.join( entry_path , module_name+'.py' )
if os.path.exists( file_path ):
spec = importlib.util.spec_from_file_location(module_name, file_path)
self.own_functions_cache = False # to avoid infinite recursion
self.touch('_BEFORE_CODE_LOADING')
self.own_functions_cache = importlib.util.module_from_spec(spec)
sys.path.insert( 0, entry_path ) # allow (and prefer) code imports local to the entry
spec.loader.exec_module( self.own_functions_cache )
sys.path.pop( 0 ) # /allow (and prefer) code imports local to the entry
else:
self.own_functions_cache = False
else:
logging.debug(f"[{self.get_name()}] The entry does not have a path, so no functions either")
self.own_functions_cache = False
return self.own_functions_cache
def reload(self):
"""Triggers reloading data, code and clears call cache.
Useful when another axs process is allowed to update entries and we need to pick up the changes.
"""
self.own_data_cache = None
self.call_cache = {}
self.own_functions_cache = None
return self
def pickle_one(self):
"""Return a command that would (hopefully) load *this* entry at a later time. Used recursively by pickle_struct()
"""
if self.parameters_path:
return [ "^", "bypath", self.parameters_path ]
elif self.entry_path:
if self.get_container():
return [ "^", "byname", self.get_name()]
else:
return [ "^", "bypath", self.get_path()]
else:
fresh_entry_opt_args = { "own_data": self.pickle_struct(self.own_data()) }
if self.container_object:
fresh_entry_opt_args["container"] = self.container_object.pickle_one()
return [ "^", "fresh_entry", [], fresh_entry_opt_args ]
def save(self, new_path=None, on_collision="force", completed=None): # FIXME: "force" mimics old behaviour. To benefit from the change we need to switch to "raise"
"""Store [updated] own_data of the entry
Note1: the entry didn't have to have existed prior to saving
Note2: only parameters get stored
Usage examples :
axs fresh_entry coordinates , plant x 10 y -5 , save
axs fresh_entry , plant contained_entries '---={}' _parent_entries --,:=AS^IS:^:core_collection , save new_collection
"""
if new_path:
self.set_path( new_path )
self.is_stored = False
else:
new_path = self.get_path()
own_data = self.own_data()
if ("__completed" in own_data) or ("__query" in own_data) or (completed is not None):
self["__completed"] = completed or False
parameters_path = self.get_parameters_path()
parameters_dirname, parameters_basename = os.path.split( parameters_path )
if parameters_dirname and not self.is_stored: # directory needs to be created
if os.path.exists( parameters_dirname ): # unexpected collision
if on_collision in ("force", "ignore"):
logging.warning(f"[{self.get_name()}] Saving into existing directory {parameters_dirname} in --on_collision=force mode")
elif on_collision=="timestamp":
prev_parameters_dirname = parameters_dirname
parameters_dirname += '_' + ufun.generate_current_timestamp(fs_safe=True)
logging.warning(f"[{self.get_name()}] Collision when saving into existing directory {prev_parameters_dirname}, switching to {parameters_dirname} in --on_collision=timestamp mode")
if self.parameters_path:
parameters_path = os.path.join( parameters_dirname, parameters_basename)
else:
self.name = os.path.basename(parameters_dirname)
self.entry_path = None
parameters_path = self.get_parameters_path()
parameters_dirname, parameters_basename = os.path.split( parameters_path )
if os.path.exists(parameters_dirname): # still a collision?
raise FileExistsError( f"Cannot save to {prev_parameters_dirname} or {parameters_dirname} as both directories exist. Please investigate or use --on_collision=force to override" )
else:
os.makedirs( parameters_dirname )
else: # elif on_collision=="raise":
raise FileExistsError( f"Cannot save to {parameters_dirname} as the directory exists. Use --on_collision=force to override" )
else:
os.makedirs( parameters_dirname )
json_string = ufun.save_json( self.pickle_struct(own_data), parameters_path, indent=4 )
logging.info(f"[{self.get_name()}] parameters {json_string} saved to '{parameters_path}'")
self.call('attach')
ak = self.get_kernel()
if ak:
ak.encache( new_path, self )
self.is_stored = True
return self
def remove(self):
"""Delete the entry from the file system (keeping the memory shadow)
Usage examples :
axs byname hebrew_letters , remove
"""
self.call('detach')
if self.is_stored:
entry_path = self.parameters_path or self.entry_path
ufun.rmdir( entry_path )
logging.info(f"[{self.get_name()}] {entry_path} removed from the filesystem")
ak = self.get_kernel()
if ak:
ak.uncache( entry_path )
self.is_stored = False
else:
logging.warning(f"[{self.get_name()}] was not stored in the file system, so cannot be removed")
return self
if __name__ == '__main__':
logging.basicConfig(level=logging.DEBUG, format="%(levelname)s:%(funcName)s %(message)s")
print('-'*40 + ' Entry direct creation and storing: ' + '-'*40)
base_ordinals = Entry(entry_path='base_ordinals', own_data={
"0": "zero",
"1": "one",
"2": "two",
"3": "three",
})
assert base_ordinals[2]=="two", "Accessing own parameter of an unstored object"
derived_ordinals = Entry(entry_path='derived_ordinals', own_data={
"5": "five",
"6": "six",
"7": "seven",
"8": "eight",
}, parent_objects=[base_ordinals]).save()
assert derived_ordinals["7"]=="seven", "Accessing own parameter of a stored object"
assert derived_ordinals[3]=="three", "Accessing inherited (unstored) parameter of a stored object"
base_ordinals.save()
assert derived_ordinals["1"]=="one", "Accessing inherited (stored) parameter of a stored object"
base_ordinals[4]="four"
base_ordinals.save()
assert base_ordinals["4"]=="four", "Accessing inherited (added) parameter of a stored object"
# FIXME: add examples entries with code, and call that code